Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211450g00010 ATGCCGTTATGGTGGGGAAGGTCGAAAGAGGGAAAGAAGAGAAAGTCAAAGAGGGAACGTATTATTGAGGCAATACAGCAGAAATTTAAGAGTGCTTCTGAAAAGATGCGCAATGGCATATCCGAAGAATCTAGAAGACATTGTATTGGCAACAAGTCAGAAAAGAGATCCCAATCTGCTGTGCCTTCTAGATCATCATCACCCTCGTCCAAATATGTCTTCCGCTGTCGAAGTTTTTCAGAGACGCCACTTTCTAAGCGGCTCCCACTGCCAGGGTCGCACCTTCCTACTGTCAGTGGTGCAAATTCTGAAATTTGTTTACCATCAATAATGGAAAGGGCTAATGGCTCGAAGCGATCTCCACATTTTCGCCTACCCACACATGGTGATGTTTCCAACAGGGGATATCCTACTGATGCTGATGGATATATAGATACTGCATCTGTTTCAAGTGATAGCTCTGGTTTTAGTGGTGACTCATCTGATTCACATCTCATTAGTCCTCTGGCAACTGACTGTGAAATTGGAAACACGACCACCATTAACAGATCTTTCAGGAACCGATCACCTGTTACTTTCCGGAGTGACTTAGGAGCATCCTCAAACCGAGCTCCTCAATTGTGCAGCGATAAGAATCCTGCTATTTCACCAAAACAGAGTCGTTTGCATTTGCAAAATCTAAAAGTTAGTACCTGTGGTTTATTCAGTGCTCCAGAAAGTTCAACATCAAGTCCTTCAAAAAGTCCAGTTAGAGAACTTAGCCCTGACCAGGTATTAAACTCTGAACTATGGACAGGAAAACCTTGTCCATATGTATCTTCAGGGAACTACTCTAGTCCTGGTTCAGGCCAAAACTCAGATGTTGGGGATCTGCCGGGACAGCTATTTTTGCCTCTTAATAGGTACAGCACTGAGTGTTCTCCTATACCTAGTCCAAGAATGACAAGCCCTGGTCCTCGTTCCAGAATACATAGTGGTGCTGTCACACCTTTGCATTCACGAGCTGGGGCCTTCACTTCAGAATTAACTACAAGACGACCTGATGATGTTACTCAACAAACTCATCCTTTACCGCTTCCTCCAATAGCAGCAACCAGTTCTTGCCTTTCTCCAAACTATTCTTCATCAACAACTCCTTCAGCTCCTCACAGTCCCGCCGGAGCAGAGATCCAAACAAATCAAGTTTCACGCTGGAAAAAAGGAAAGTTGCTTGGAAGGGGAACATTTGGACATGTTTATCTTGGTTTTGACAGTGAAAGTGGTGAGATGTGTGCGATGAAGGAGGTAACACTTTTTGCAGATGATGCTAGATCGAGGGAATCTGCACAGCAACTTCAACAAGAAATTGTGCTTCTAAGTCAGTTGCAGCATCCAAATATAGTCCGGTATTATGGTTCTGAAACGGTAGAAGACAAACTTTACATATACTTGGAGTATGTCGCCGGTGGGTCTATTTACAAACTGCTTCGAGAGTATGGCCAGTTAGGTGAAAATGCCATTCGTAACTATACTCGGCAAATTCTGTTAGGACTTGCATATTTGCATGCTAAGAACACGGTCCATCGTGACATTAAGGGAGCAAATATACTAGTTGACCCTAATGGATGGATTAAATTGGCAGATTTTGGGATGGCAAAGCATATAACCGCAGAGTCTTGTCCATTTTCACTCAAAGGAAGTCCTCACTGGATGGCACCTGAGGTTGTAAATAATTCAAATGAATGTAATCTTGCTGTTGATATTTGGAGTCTCGGCTGCACTGTTCTGGAGATGGCTACAACAAAACCACCTTGGAGCCAGCTTGAGGGGGTTGCTGCTATATTTAAGATTATACTGTTGGAGAAACTGCCTGAAGCACCAGATCATCTATCAGAAGAGGGAAAAGACTTTGTGAGGCTTTGTCTGCAAAGGAATCCAAAAGACCGCCCTTCAGCTGCTCAACTTCTAGAGCATCCATTTGTCAAAAAGGCTACACCAGAAAGAACCATTCTGACTGCACATCCTTCAGAAGCACCACCAGCTGTTGTAGATGCACTGAGATCTATGGTAAAAGCAATTGGAAGTGTATACATACTATCTTGCATTGCATAA 2091 0.4347 MPLWWGRSKEGKKRKSKRERIIEAIQQKFKSASEKMRNGISEESRRHCIGNKSEKRSQSAVPSRSSSPSSKYVFRCRSFSETPLSKRLPLPGSHLPTVSGANSEICLPSIMERANGSKRSPHFRLPTHGDVSNRGYPTDADGYIDTASVSSDSSGFSGDSSDSHLISPLATDCEIGNTTTINRSFRNRSPVTFRSDLGASSNRAPQLCSDKNPAISPKQSRLHLQNLKVSTCGLFSAPESSTSSPSKSPVRELSPDQVLNSELWTGKPCPYVSSGNYSSPGSGQNSDVGDLPGQLFLPLNRYSTECSPIPSPRMTSPGPRSRIHSGAVTPLHSRAGAFTSELTTRRPDDVTQQTHPLPLPPIAATSSCLSPNYSSSTTPSAPHSPAGAEIQTNQVSRWKKGKLLGRGTFGHVYLGFDSESGEMCAMKEVTLFADDARSRESAQQLQQEIVLLSQLQHPNIVRYYGSETVEDKLYIYLEYVAGGSIYKLLREYGQLGENAIRNYTRQILLGLAYLHAKNTVHRDIKGANILVDPNGWIKLADFGMAKHITAESCPFSLKGSPHWMAPEVVNNSNECNLAVDIWSLGCTVLEMATTKPPWSQLEGVAAIFKIILLEKLPEAPDHLSEEGKDFVRLCLQRNPKDRPSAAQLLEHPFVKKATPERTILTAHPSEAPPAVVDALRSMVKAIGSVYILSCIA 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211450g00010 696 MobiDBLite consensus disorder prediction 339 392 - -
Stsc211450g00010 696 Gene3D Transferase(Phosphotransferase) domain 1 395 676 - -
Stsc211450g00010 696 MobiDBLite consensus disorder prediction 54 72 - -
Stsc211450g00010 696 CDD STKc_MEKK1_plant 397 654 - -
Stsc211450g00010 696 ProSitePatterns Protein kinases ATP-binding region signature. 404 427 IPR017441 GO:0005524
Stsc211450g00010 696 MobiDBLite consensus disorder prediction 35 53 - -
Stsc211450g00010 696 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 47 662 - -
Stsc211450g00010 696 SMART serkin_6 398 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211450g00010 696 FunFam Mitogen-activated protein kinase kinase kinase 396 678 - -
Stsc211450g00010 696 Pfam Protein kinase domain 399 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211450g00010 696 MobiDBLite consensus disorder prediction 117 136 - -
Stsc211450g00010 696 ProSiteProfiles Protein kinase domain profile. 398 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211450g00010 696 MobiDBLite consensus disorder prediction 27 72 - -
Stsc211450g00010 696 SUPERFAMILY Protein kinase-like (PK-like) 395 679 IPR011009 -
Stsc211450g00010 696 MobiDBLite consensus disorder prediction 365 392 - -
Stsc211450g00010 696 MobiDBLite consensus disorder prediction 192 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211450g00010 Stsc-Chr211450 53161 56436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211450g00010 1 695 MAP Kinase Kinase Kinase AT1G63700 55.989 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc211450g00010 Pkinase 3.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211450g00010 K20717 - gmx:100814422 803.512