Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211450g00006 ATGGAGAACAGGGAGGAAGATGTGAAGGTAGGAGCAAGCAAGTTCAGAGAGAGGCAGGCATTAGGGACAGCAGCACAAACAGAGAGGGACTACAAGGAGGCACCAGCAGCGCCGTTGTTTGAACCAGGTGAGCTCAAGTCATGGTCCTTCTACAGAGCAGGCATTGCTGAGTTTGTTGCCACATTCTTGTTCCTCTACATCACTGTCTTGACTGTCATGGGTGTCAAGACTTCACCCTCCATGTGCTCCTCTGTTGGCATTCAAGGTATCGCTTGGGCCTTTGGTGGCATGATCTTCGCCCTTGTCTACTGCACTGCTGGAATCTCAGGTGGACACATAAACCCAGCAGTGACATTTGGTCTGTTTTTGGCAAGGAAGTTGTCCCTCACAAGGGCAATATTCTACATAGTGATGCAGTGTCTTGGAGCTATATGTGGTGCTGGTGTAGTGAAGGGTTTTGAGGGTAATGCTCGCTATGAGATGTTAGGAGGAGGAGCCAATGTGGTGAACCATGGTTACACCAAGGGTGATGGCCTTGGAGCTGAGATTGTTGGCACCTTTGTTCTTGTCTACACTGTTTTCTCTGCCACGGATGCCAAGAGAAACGCTAGGGACTCTCATGTCCCTGTTTTGGCCCCTCTTCCCATTGGCTTTGCTGTGTTCTTGGTCCACTTGGCTACCATTCCCATCACAGGAACTGGCATTAACCCAGCAAGGAGTCTCGGAGCTGCCATCATCTTCAACATGGACAAGGCATGGGATGACCATTGGGTTTTCTGGGTTGGACCTTTCATTGGAGCTGCTCTTGCTGCTTTGTATCACCAGATAGTGATCCGAGCCATTCCATTCAAGACAAGGGCTTAA 864 0.4988 MENREEDVKVGASKFRERQALGTAAQTERDYKEAPAAPLFEPGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVKTSPSMCSSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFEGNARYEMLGGGANVVNHGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPVLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNMDKAWDDHWVFWVGPFIGAALAALYHQIVIRAIPFKTRA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211450g00006 287 NCBIfam MIP family channel protein 56 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211450g00006 287 Pfam Major intrinsic protein 44 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211450g00006 287 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Stsc211450g00006 287 Gene3D Glycerol uptake facilitator protein. 37 285 IPR023271 -
Stsc211450g00006 287 SUPERFAMILY Aquaporin-like 44 279 IPR023271 -
Stsc211450g00006 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 282 IPR034294 -
Stsc211450g00006 287 FunFam Probable aquaporin PIP1-2 37 287 - -
Stsc211450g00006 287 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211450g00006 287 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211450g00006 287 PRINTS Major intrinsic protein family signature 257 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211450g00006 287 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211450g00006 287 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211450g00006 287 PRINTS Major intrinsic protein family signature 217 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211450g00006 287 CDD MIP 52 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211450g00006 Stsc-Chr211450 36972 38529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211450g00006 1 286 Major Intrinsic Protein MIP AT4G23400 87.108 2.33e-178 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211450g00006 K09872 - gmx:100796833 531.561