Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211450g00002 ATGCTGCCAGAGAATTTCAAAGAACAGCTTGCTTTGGCTGTGAGAAGCATCCAGTGGAGCTATGCAATATTCTGGTCTACTTCATCATCTACCCAACCCGGGGTGTTGAGTTGGGGGGAAGGATATTACAATGGAGACATTAAGACAAGGAAGACAAGTCAAGGAGTGGAGCTCAATCCTGATCAGATAGGGTTGCAGAGGAGTGAGCAGCTTAGAGAATTATTCAAGTCCCTAAAAGCTGCAGAAGCCAGCCCTCAAACCAAAAGGCCTTCAGCAGCACTTTCTCCAGAAGATCTCACAGATACAGAATGGTACTATTTGGTTTGCATGTCCTTTGTATTCAACACTGGCCAAGGGTTACCAGGAAAGGCTCTTGCAAAAGCTGAACCAATTTGGCTGTGTGATGCTCCTTCTAGTGATTGTAGAGATTTTAGTCGCTGTCTTCTGGCTAAGAGTGCATCCATTCAGACAGTGGTGTGCTTTCCTTTTATTCATGGGGTTATTGAGCTGGGTACAACTGATCATGTCTCAGAAGATCTCAGTCTCATTCAACAGATCAGAACTTCCTACTTGGATATTCTTGATTTCGGTGTCCATAACATATATGGAGCTACATTGAACGAAGATGTTGCTTGTGCATCAGTTAATGTGAAACATGCTCCAGAAGTAGGAGGTGCATTAATCAACACCACTTCTCCTAATAACAGTTCAAATGCATTTCAAGCCAATCAACCACCAGATGAAACATTCATGGCTGAAAGGATAAATAATGGCACCTCTCAAATCCAAACTTGGCAAGCTATGGATGATGAATTGAGCAATGGTGTTCATAATTCTAGTGACTGCGTATCTCAAACGCTTCACAGTTCTGAGAAAATTGCTTCTCTTCCAAAGGGTGATAACCTCACTGACCATAGTCCCAAGGACCTTGAGAAGTGCAATAATTCAAAAATGACATTAGTTGATCCTCGAAGCGACGACTGGCATTATCAGATGGTTCTTTCTACCCTTCTAAAAAGCTCAGACCAGTTATTCATGGGGATGCATTTTCAAAATTTTCATCAGGAATCAAGCTTTGTCAGTTGGAAGAAAGCTGGGCCAGTGAGCAGCCAAAGACCAAGAACTGGAGGAACCTCACAAACTTTATTGAAGAAAATGTTGTTCGAAGTTCCTCGGATGCACTTGGATGGGATGCTTGAGTGTCAAGAAGAGAATGACTATAAAGAAGTAGTGAGAACAGAAGCTGAAGAAAATGGCATGAACCATGTTTTGTCAGAGAGAAGGAGAAGAGCAAAGCTAAATGAAAGGTTTTTAACCCTTAGATCAATGGATGACAAAGTTTCAATACTAGATGATGCAATAGAATACCTTAGAAAGCTTGAAAAAAGGATAAAAGAGTTGGAAGCTCATAAGGATCTAACTGATAGAGAGGCTAGAACTAAAAGATCACCACAAGATATGGTGGAGAGGACTTCTGATAATTATTTTAACAAAACTGATAATGGCAAGAAATCAATGGCAAAAAAGAGGAAGTCTCGTGACATGGATGACACAAGTCCAGAGACTAATGATGTTGCTGTTAACATCAATGAGAATAATGAAGTTGTGGTTGAAATGAATTGCCCTTCAAAAGCAGGAATGTTTCTAAAAATTATGGAAGGAGTTAGCAGTCTCGGTTTGAATTTTCATTCAGTTCAGTCCAGAGAAGCTGATGGGAATCTTTATGTTACCCTTAAATCTAAGCTCACAGGATCAACTATTGTATCAGCAAAAAGGATCAAACAAACACTGCAAAATGTGGCTTCCAAGTGTTGA 1815 0.405 MLPENFKEQLALAVRSIQWSYAIFWSTSSSTQPGVLSWGEGYYNGDIKTRKTSQGVELNPDQIGLQRSEQLRELFKSLKAAEASPQTKRPSAALSPEDLTDTEWYYLVCMSFVFNTGQGLPGKALAKAEPIWLCDAPSSDCRDFSRCLLAKSASIQTVVCFPFIHGVIELGTTDHVSEDLSLIQQIRTSYLDILDFGVHNIYGATLNEDVACASVNVKHAPEVGGALINTTSPNNSSNAFQANQPPDETFMAERINNGTSQIQTWQAMDDELSNGVHNSSDCVSQTLHSSEKIASLPKGDNLTDHSPKDLEKCNNSKMTLVDPRSDDWHYQMVLSTLLKSSDQLFMGMHFQNFHQESSFVSWKKAGPVSSQRPRTGGTSQTLLKKMLFEVPRMHLDGMLECQEENDYKEVVRTEAEENGMNHVLSERRRRAKLNERFLTLRSMDDKVSILDDAIEYLRKLEKRIKELEAHKDLTDREARTKRSPQDMVERTSDNYFNKTDNGKKSMAKKRKSRDMDDTSPETNDVAVNINENNEVVVEMNCPSKAGMFLKIMEGVSSLGLNFHSVQSREADGNLYVTLKSKLTGSTIVSAKRIKQTLQNVASKC 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211450g00002 604 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 417 467 IPR011598 GO:0046983
Stsc211450g00002 604 Coils Coil 450 477 - -
Stsc211450g00002 604 Pfam Helix-loop-helix DNA-binding domain 421 461 IPR011598 GO:0046983
Stsc211450g00002 604 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 189 IPR025610 -
Stsc211450g00002 604 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 420 477 IPR036638 GO:0046983
Stsc211450g00002 604 Gene3D - 416 486 IPR036638 GO:0046983
Stsc211450g00002 604 MobiDBLite consensus disorder prediction 475 524 - -
Stsc211450g00002 604 PANTHER TRANSCRIPTION FACTOR TT8 3 602 - -
Stsc211450g00002 604 SMART finulus 423 466 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211450g00002 Stsc-Chr211450 14715 17720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211450g00002 2 604 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 45.692 1.01e-169 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc211450g00002 bHLH-MYC_N 2.1e-50 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211450g00002 - - ahf:112732736 1013.06