Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc210g00002 ATGGGAAGAGGCGGCGAGAGTTCCGGCAACGGAGAAGCCTCAAGTTCCGTGAACTCGCACCACCGGTCAACATCAACTGCAGCAGCGTTCAAGGCGTGGTCAAAGACAGTTCATGAGTGCGAGGAGCACTTCAAGGTGAACCTGCGTTCGGGGCTGAGCTCCGGCGAGGTCGAGAACCGCCGGCGAGTCCACGGCTGGAACGAGCTTGAGAAGCACGAGGGGCAATCAATATGGAGCCTCATCGCGGGGCAGTTCAACGACACGCTAGAACGCAATGCCGAAAATGCTCTCGAGGCCTTGAAGGAGATCCAATCAGAGCATGCCACCGTGATTCGCGACGGAAAGAAGGTTCATAACTTACCGGCGAGGGAACTCGTTCCCGGCGATATCGTAGAGCTTAAGGTCGGTGATAAGGTCCCTGCAGACATGCGAGTAGCAGAATTAGTTAGCTCTACTCTGAGACTAGAACAGGGCTCTCTCACCGGTGAAAGCGAAGCGGTTAATAAAAATAACAAACCAGTCCCTGAAGACGCTGATATACAAGGCAAGAGTTGCATGGTTTTCGCGGGAACGACAGTTGTTAACGGAAACTGTATCTGTTTGGTATCTCAAATAAGGATGGAGACTGAGATTGGTAAGGTGCATACACAAATCCACGTAGCATCACAAAGTGAGGAGGATACACCTTTGAAGAAGAAGCTGAATGAGTTTTGGGAAACGTTGACTTTGATAATCGGTGTGATTTGCACTGCGGTTTGGCTCATTAATGTTAAGTATTTCCTCACGTGGGAATATGTTGATGGTTGGCCCAGGAACTTCAAGTTTTCCTTTGAGAAATGTACTTATTACTTCGAAATTGCTGTGGCTTTGGCTGTGGCGGCTATTCCGGAAGGCTTGCCTGCGGTGATCACCACTTGCCTTGCCTTAGGCACGCGGAAGATGGCTCAGAAGAATGCACTCGTTATGAAGCTCACGAGTGTTGAGACTCTAGGATGTACTACTGTCATTTGCTCTGATAAAACAGGTACATTGACCACGAATCAGATGGCAGTGGCGAAATTGGTGGCGATTGGGGCTAAGGTGGACATGCTGCGGGCCTTCAAGGTGGAAGGGACTACTTACAACCCACGTGATGGGAAAATTGAGGACTGGCCGAAGGGTGGAATGGATGCTAACCTTGAAATGATTGCAAAAATAGCAGCCATTTGCAATGATGCTGGAATTGCAAAGTCAGAGCATAAGTTTGTTGCAAGTGGAATGCCTACTGAAGCAGCCTTAAAGGTCCTAGTGGAGAAGATGGGCCTTCCTAAAAGATCCAAGAATTTATCTACAGAAAATTCAAGTACCGTACTAAGTTTGTGTACATCAATGTCTATGTCTCAGTGTCCTGTCCACCAGAAACAAACGCAACCTAGGTGTTATCGTGGACTCTGGTCTAGGAAAAAGGTCCCTGCTGGTAAAGGTAATGTTTCCCTTTCTGTTTCCCTGGGTGCCGTCGAAAATGTATTGGAAAGATGCTGTAAAATTCAGTTGCGTGATGGTTCTGTTGTGGAGCTGGATACTAATGCTAGGTACCTTGTATTGCAAGCTCTTCATGAAATGTCAACTACTGCATTACGTTGCTTAGGATTTGCATACAAGGATGATGTCCCTATGTTTGAAGGCTACAATGGTAATGATGATCATCCAGCTCACCAGCTTTTGCTTAATCGTTCCAACTATTCTTCTATAGAAAGGGAACTTATATTTGTTGGCTTGGCTGGGTTGAGGGATCCACCTAGGGAGGAGGTATACCAGGCAATTCAGGATTGCAGAGCAGCTGGGATCCGAGTTATGGTTATTACTGGAGACAGCAAGAATACAGCGGAAGCCATATGCCATGACATAGGGGTATTTAGACGTGACGAAGACACCAGGTCAAAAAGCACAACAGGAAAAGAGTTTATAGAGCTAAATGATAAAAAAGCTTTTTTGAAACAGAGTGGTGGACTTTTATTTTCAAGAGCTGAACCTAGGCATAAGCAAGAAATTGTGAGGTTGCTGAAAGAAGAAGGGGAGGTGGTGGCCATGACTGGGGATGGTGTTAATGATGGACCTGATTTGAAGCTTGCTGATATTGGAATTGCAATGGGCATAGCTGGGACAGAGGTTGCAAAGGAAGCTTCAGATATGGTGTTGGCTGATGATAACTTTAGTACAATTGTTGCTGCCGTCGGTGAAGGTAGATCTATCTACAATAACATGAAGGCTTTTATCAGGTGA 2262 0.4651 MGRGGESSGNGEASSSVNSHHRSTSTAAAFKAWSKTVHECEEHFKVNLRSGLSSGEVENRRRVHGWNELEKHEGQSIWSLIAGQFNDTLERNAENALEALKEIQSEHATVIRDGKKVHNLPARELVPGDIVELKVGDKVPADMRVAELVSSTLRLEQGSLTGESEAVNKNNKPVPEDADIQGKSCMVFAGTTVVNGNCICLVSQIRMETEIGKVHTQIHVASQSEEDTPLKKKLNEFWETLTLIIGVICTAVWLINVKYFLTWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVMKLTSVETLGCTTVICSDKTGTLTTNQMAVAKLVAIGAKVDMLRAFKVEGTTYNPRDGKIEDWPKGGMDANLEMIAKIAAICNDAGIAKSEHKFVASGMPTEAALKVLVEKMGLPKRSKNLSTENSSTVLSLCTSMSMSQCPVHQKQTQPRCYRGLWSRKKVPAGKGNVSLSVSLGAVENVLERCCKIQLRDGSVVELDTNARYLVLQALHEMSTTALRCLGFAYKDDVPMFEGYNGNDDHPAHQLLLNRSNYSSIERELIFVGLAGLRDPPREEVYQAIQDCRAAGIRVMVITGDSKNTAEAICHDIGVFRRDEDTRSKSTTGKEFIELNDKKAFLKQSGGLLFSRAEPRHKQEIVRLLKEEGEVVAMTGDGVNDGPDLKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIR 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc210g00002 753 ProSitePatterns E1-E2 ATPases phosphorylation site. 339 345 IPR018303 -
Stsc210g00002 753 SUPERFAMILY Calcium ATPase, transmembrane domain M 31 752 IPR023298 -
Stsc210g00002 753 Pfam E1-E2 ATPase 103 317 - -
Stsc210g00002 753 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 192 361 - -
Stsc210g00002 753 Gene3D - 586 736 IPR023214 -
Stsc210g00002 753 Pfam haloacid dehalogenase-like hydrolase 586 705 - -
Stsc210g00002 753 Pfam Cation transporter/ATPase, N-terminus 33 88 IPR004014 -
Stsc210g00002 753 PANTHER CALCIUM-TRANSPORTING ATPASE 90 753 - -
Stsc210g00002 753 SUPERFAMILY HAD-like 335 752 IPR036412 -
Stsc210g00002 753 FunFam Calcium-transporting ATPase, putative 50 219 - -
Stsc210g00002 753 PRINTS P-type cation-transporting ATPase superfamily signature 691 710 - -
Stsc210g00002 753 PRINTS P-type cation-transporting ATPase superfamily signature 715 727 - -
Stsc210g00002 753 PRINTS P-type cation-transporting ATPase superfamily signature 156 170 - -
Stsc210g00002 753 PRINTS P-type cation-transporting ATPase superfamily signature 337 351 - -
Stsc210g00002 753 PRINTS P-type cation-transporting ATPase superfamily signature 585 596 - -
Stsc210g00002 753 PRINTS P-type cation-transporting ATPase superfamily signature 607 617 - -
Stsc210g00002 753 MobiDBLite consensus disorder prediction 8 22 - -
Stsc210g00002 753 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 347 592 - -
Stsc210g00002 753 MobiDBLite consensus disorder prediction 1 22 - -
Stsc210g00002 753 SMART Cation_ATPase_N_a_2 31 90 IPR004014 -
Stsc210g00002 753 SFLD p-type atpase 319 743 IPR044492 -
Stsc210g00002 753 Gene3D - 474 585 IPR023299 GO:0000166
Stsc210g00002 753 Gene3D - 37 197 - -
Stsc210g00002 753 Gene3D - 198 361 - -
Stsc210g00002 753 SUPERFAMILY Calcium ATPase, transduction domain A 105 216 IPR008250 -
Stsc210g00002 753 FunFam Calcium-transporting P-type ATPase, putative 586 736 - -
Stsc210g00002 753 SFLD Haloacid Dehalogenase 319 743 - -
Stsc210g00002 753 NCBIfam HAD-IC family P-type ATPase 665 752 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc210g00002 753 NCBIfam HAD-IC family P-type ATPase 276 358 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc210g00002 753 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 344 589 IPR023299 GO:0000166
Stsc210g00002 753 Coils Coil 86 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc210g00002 Stsc-Chr210 12267 16709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc210g00002 1 753 Primary Pumps ATPases(2) AT1G07670 66.294 0.0 1013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc210g00002 K01537 - gmx:100812151 1108.59