Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc20g00020 ATGTACAAGAAGGGGAGATTAGTTGGATGCAATAATGGATATGTTGAGACTGATCCATCTGGAAGATATGGCCGTTTCAGAGATGTTTTGGGGAAAGGAGCGATGAAGGTAGTGTATAAGGCATTTGATGAAGTGCTTGGAATGGAAGTGGCTTGGAACCAAGTCAAGCTTGGTGATGTTTTTCATTCACCAGAACAACTACAACGTCTTTATTCAGAGGTCCATCTTCTCAAGAACCTTGATCATCAATCAATCATGACCTTCCATGACTCTTGGATCGATGTCCATTGTAGAACCTTCAACTTCATCACTGAATTCTTCACCTCTGGCACCCTAAGAGAGTATAGGAAGAAGTACAAGAGAGTAGACATAAGAGCAATTAAGAATTGGGCAAGGCAGATTCTAAGTGGATTGGAGTATTTACACAGCCATGATCCTCCAGTGATACACAGAGACCTCAAATGTGACAACATCTTTGTCAATGGCCATCTAGGTCAGCTCAAGATTGGTGACTTAGGCCTTGCTGCAATTCTTCGTGATGGATCACAACATGCACACAGTGTCATTGGCACACCTGAATTTATGGCACCTGAATTGTATGAAGAGGAATACAATGAGCTTGTTGATGTTTATTCCTTTGGGATGTGTATGATTGAGTTGTTTACTTCTGAGTTCCCATACAGTGAATGCTCCAACCCTGCTCAAATTTACAAGAAAGTTACCTCAGGGAAGCTACCAAATGCCTATTACAGAATCAATGATTTGGAAGCCCAAAGATTTATAGGAAAATGTTTGGCAAATGTCTCAGAGAGGTTGCCAGCAAAGGACCTCTTGTTGGATCCATTTTTGGCAGTGGACCAATTACCACTACCAAGCCCAAGGCCAATAACGAGCCCAATTTCAAGCCCAACATTACATCATTTCAGTGCCAAAGAGAAGAAGCCTTCAATCATGACTCAACAAAGGAAGGGCACAAACATGACAATAACAGGCTCCCTGAATGAAGAGGATGACACAGTTTTCCTTAAAGTACAAATCTCCAACCAAAGTGGGAGCACAAGAAACATATACTTCCCATTTGACACCATAAATGACACAGCCATTGATGTGGCAATGGAGATGGTTAAAGAACTTGAAATTAGTGACTTGGAACCAATGGAGATTGCTGAAATGATTGAAGAAGAGGTATCAGCTTTGGTTCCAACATGGAGAGATTGGGGAAATTCTGATAAGTATCAAAGACAATATAGCTTTAGCTTTGAAGAAGAACAAGAAGATTATGATAACGATGAGGAGGATGATGATATTAGCAATAACAATCACAATAATAATCCTTTCTTCTCATTGTCTTCTAGATCTTCCTCTCATGGTTCTCTCCCAATGCCTTACCAAAATAATACACACATTGGTGGAAATCATTGGCCTCAAGATGATCCCCTTATGAATGATGATGCAAGCTCTCATAGTTCTTTGGATTCCTTCAAGTATTCCCATTTACATTACTGTGACGCAAGCAATGAGGAAAATGATCATGTTTCAAATCTAGCCATCAACAACAACAAGTGCACAAGATTTTGCCCTAGAGAAGAGGTGGTGGGGGCTGATTTCACCAACCAGCTTTGCAACTTGAGAATGGATCCTTGCAGGTATCCTAAGGCAATGGTAGGGCATGGAATCCCAAGATTAACTAGGATTCAATCATATGTTGATGTGAGGAGGCAACAGATACAAAGATCATTGGTGGAGGAGATACATAAAAGAAGGATGTTCAAGACTGTTGATGCCATTGAGAACATTGGATTTCAGAATCCCAAATGA 1818 0.4059 MYKKGRLVGCNNGYVETDPSGRYGRFRDVLGKGAMKVVYKAFDEVLGMEVAWNQVKLGDVFHSPEQLQRLYSEVHLLKNLDHQSIMTFHDSWIDVHCRTFNFITEFFTSGTLREYRKKYKRVDIRAIKNWARQILSGLEYLHSHDPPVIHRDLKCDNIFVNGHLGQLKIGDLGLAAILRDGSQHAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCMIELFTSEFPYSECSNPAQIYKKVTSGKLPNAYYRINDLEAQRFIGKCLANVSERLPAKDLLLDPFLAVDQLPLPSPRPITSPISSPTLHHFSAKEKKPSIMTQQRKGTNMTITGSLNEEDDTVFLKVQISNQSGSTRNIYFPFDTINDTAIDVAMEMVKELEISDLEPMEIAEMIEEEVSALVPTWRDWGNSDKYQRQYSFSFEEEQEDYDNDEEDDDISNNNHNNNPFFSLSSRSSSHGSLPMPYQNNTHIGGNHWPQDDPLMNDDASSHSSLDSFKYSHLHYCDASNEENDHVSNLAINNNKCTRFCPREEVVGADFTNQLCNLRMDPCRYPKAMVGHGIPRLTRIQSYVDVRRQQIQRSLVEEIHKRRMFKTVDAIENIGFQNPK 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc20g00020 605 SUPERFAMILY Protein kinase-like (PK-like) 26 320 IPR011009 -
Stsc20g00020 605 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 495 - -
Stsc20g00020 605 SMART serkin_6 24 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc20g00020 605 MobiDBLite consensus disorder prediction 421 462 - -
Stsc20g00020 605 Gene3D Transferase(Phosphotransferase) domain 1 107 287 - -
Stsc20g00020 605 Gene3D Phosphorylase Kinase; domain 1 10 105 - -
Stsc20g00020 605 MobiDBLite consensus disorder prediction 439 462 - -
Stsc20g00020 605 FunFam Probable serine/threonine-protein kinase WNK1 10 105 - -
Stsc20g00020 605 ProSiteProfiles Protein kinase domain profile. 24 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc20g00020 605 CDD STKc_WNK 22 283 - -
Stsc20g00020 605 FunFam probable serine/threonine-protein kinase WNK9 107 288 - -
Stsc20g00020 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Stsc20g00020 605 Pfam Protein kinase domain 28 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc20g00020 Stsc-Chr20 158602 166219 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc20g00020 13 430 MAP Kinase Kinase Kinase AT3G51630 67.059 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Stsc20g00020 Pkinase 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc20g00020 K08867 - gmx:100816187 835.869