Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc20g00018 ATGAACACAAAAGATTCACTCACAAAGGAGAAGAAGAATATGGGGAATTACAAGTTTAGGCTTTCAGATATGATTCCAAATGCTTGGTTTTACAAACTTAGAGATAATATGTCTAAGGCAAGAAGACAAACCACCACCACCAGAAAGAAAAACCACCACCACCAACCACCACCACCACCAACCACCACAACACATTCACCAAAACCAAAGCAAGCCCATTATTGCAGCCCAAGAAAATCTTACTACTTCACAAGGGAACTCAATAATAATAATAATCAAACTCACACCAAAGTTTCTTCTTCACCACCACCACAAAGAAAATCCTCCTCCTCCTCATCATCATCATCAAAACAAAGAGAGAGAAGAATTAGGAAAAGAAGAACATCATCATCACCACCAAAGTTAGTTATTACTTCCTCCTCCTCTGTCTCCTCTGCTGCTTGTAGCTGCAGAGCAACAACAACAACCACTACTACTACTACTCCATTTCATGATGAAGAATATTCCTCAACACCTCCATTTCATGAAGAAGATTCAGATTCAGATTCCCCTAATAACAATGAACCTAATTTCAGAACAGACCATGTTCTTCTTCCAACCACCACCACCACCACCACCACAACAACAACAACAACAACAACAGAGTCTTCCTCATTTGATGAAATGATTTCTCTTTCAACATCAACAACAAACCCCAACAGTGACATAGTCATAGATGTGGACAAGAATTCTCTTGTTTCAACAAGAAATCATCATCATCATCATCATGAATATGATGACTCATTTTCTGAGCTTATTGAGCTGCCTCCAATCATAACCAAACCAAGAACAACCATGGCTGCAGAACAACACAACACGAAGAAGGTTAACAAGATTGTGAAGGAACAACAACAACAACAACAGAGGAAGAAGAACTCAGGGTTTTCTCTGAATTCACCAGGTATGAAGGTTAAGATAAATTCACCAAGGCTAATGAACAAGCTCAATAACAATGGTGCCCGGAGAAGCGTGTCGTCGTCGTCGTCGACGGGCTACCGGAGGAGCATCTCCGGGAGCTTTGCAGTGGTGAAGTCATCAATGAATCCAATGAAGGATTTCAGAGAATCAATGGTGGAGATGATTGTGGAGAACAACATAAGGAACTCAAAGGACTTGGAGGATCTTCTTGCTTGCTACCTGTCTCTGAATTCAGATGAGTATCATCAACTCATCATCAAAGTGTTCAAGCAAATTTGGTTTGATTTCACACAAATTAACACAAGGTAG 1266 0.4028 MNTKDSLTKEKKNMGNYKFRLSDMIPNAWFYKLRDNMSKARRQTTTTRKKNHHHQPPPPPTTTTHSPKPKQAHYCSPRKSYYFTRELNNNNNQTHTKVSSSPPPQRKSSSSSSSSSKQRERRIRKRRTSSSPPKLVITSSSSVSSAACSCRATTTTTTTTTPFHDEEYSSTPPFHEEDSDSDSPNNNEPNFRTDHVLLPTTTTTTTTTTTTTTTESSSFDEMISLSTSTTNPNSDIVIDVDKNSLVSTRNHHHHHHEYDDSFSELIELPPIITKPRTTMAAEQHNTKKVNKIVKEQQQQQQRKKNSGFSLNSPGMKVKINSPRLMNKLNNNGARRSVSSSSSTGYRRSISGSFAVVKSSMNPMKDFRESMVEMIVENNIRNSKDLEDLLACYLSLNSDEYHQLIIKVFKQIWFDFTQINTR 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc20g00018 421 ProSiteProfiles OVATE domain profile. 355 414 IPR006458 -
Stsc20g00018 421 MobiDBLite consensus disorder prediction 184 230 - -
Stsc20g00018 421 Pfam Transcriptional repressor, ovate 359 414 IPR006458 -
Stsc20g00018 421 MobiDBLite consensus disorder prediction 39 74 - -
Stsc20g00018 421 NCBIfam uncharacterized plant-specific domain TIGR01568 353 414 IPR006458 -
Stsc20g00018 421 MobiDBLite consensus disorder prediction 91 116 - -
Stsc20g00018 421 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 57 415 IPR038933 GO:0045892
Stsc20g00018 421 Pfam DNA-binding domain 14 51 IPR025830 GO:0003677
Stsc20g00018 421 MobiDBLite consensus disorder prediction 131 167 - -
Stsc20g00018 421 MobiDBLite consensus disorder prediction 294 316 - -
Stsc20g00018 421 MobiDBLite consensus disorder prediction 91 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc20g00018 Stsc-Chr20 131332 132768 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Stsc20g00018 Ovate 8.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc20g00018 - - ahf:112728150 455.292