Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc20g00017 ATGGCTATTTCACCGCAAATTTTCCCTCCCAGAAAACGACGACCCTCCATGGAGTCGTTTATCTCGCCGAAGCTAAACGACCTCAACCTCCTCCACTCCCTCCTCCATCTAACGACTCAAATATCATCCATAAACCCTTCAACGACACTGTTTCTGCTGAAACGCAACGCAATTGCTGTCGTTCGCAAGGCGAAGCTACTCGCCGTTCTATTCGAGGACCTAATACGAAATTCCGATACTGCCCTCGCTTCTTCTTCTTCTTCATCCTCGTTCCTCCTCTGCCTTGAAGAGACCTACATCGTTCTGCACCGAATCAAAACCCTAATTGAAGATTGCTCCAATGGAAGCAAATTCTTCTTCCTCATGCAAATCGAAACCGTCGCCGACAACTTCCACAAGCTCACCGGAGAGCTCTCTACGCTCCTTGACATCTTTCCGGTACACGACCTAGACCTGAACGACGACGTTCAGGAGCTTGTGATTCTCATCAGAAAGCACTGCTCGCAATCGAAATCGGTGATAGAAGATTCCGAAACAGAACTCCGAAACGAGGTCGTTTCGGTGCTCGAGAGAATCAAGAACGAGATCGTACCTGACCAGAGCAGACTCGCCTCTATCTTCGAGAGGTTGCAGATTCGCGATTCTTCCAGCTGCAGAGCAGAGATCGAGAGCTTGGAGGATGAGATTCAGAATCGGAGCGATGAGAATTCCAAGTCTGAGATTGTCGCCTTGATCGGTCTCGTTCGCTACGCGAAGTGCGTCCTCTTCGGCGCTTCAACCACCGCCGCAGCGTCTTCTGCAGTGGAGGCTCAACGGCGGAAACAGCCGTCGGAGTTGGTTGTTCCGGCGGACTTCCGGTGTCCTATAAGCCTCGAGCTCATGCGTGACCCCGTCGTTGTGGCAACAGGACAGACGTACGATCGTGAATCGATCAAGCTCTGGATGGATTCTGGACACAACACGTGTCCAAAAACGGGTCAGACAATGGCCCACACAGAACTCATACCTAATCGCGCGTTGAGAAACATGATAGCATTGTGGTGCCGCGAGCAGAAGATTCCTTTCGATGCAGAAACCGTTACAGGAAGGCCTAGTAGCCGCGTAACAAACAAGGCCGCGCTTGAAGCCACGCGCATGACAGCGTTGTTTCTGGTAAACAAACTCAAGGTCCCTGTAACTAACTCTCAGTCTATGGAGGACTCAAACGGAGTTGTTTACGAGCTTCGTTTTCTGGCCAAAACAGACTCGGATAGCCGAGCCTGCATAGCCGAAGCTGGAGCCATCCCGCTTTTGGTTCGGTATCTCAGCTTCGACGTTGGCGTTCATAGCCCAAGCCTGCAGGTTAACGCCGTTACAACCATATTGAACCTTTCAATTTTGGAGGCGAACAAAACGAGGATTATGGAGACTGACGGCGCACTTAACGGGGTTGCGGAGGTTTTGCGTTCGGGTGCCACGTGGGAAGCTAAGGCAAATGCAGCGGCCACGGTGTTTAGTTTGTCAGGCGTGCCAGCTTATAGAAAGAGACTTGGAAGGAAGACACGTGTCGTGAATGGATTGGTCCAGTTGGCAAGATGTGGACCCGAGGGACCAAGGCGGGATGCATTGGCGGCAATTCTTAGTTTGGCGGCGGATAGGGAAAGCGTGGCTAAGTTAGTGGAGGGTGGCGCGGTGGAGATGGCGGTTGAGGTGATGGCGGCAGTTCCGGAGGAGGCAGCAACTGTGTTGGAGGCCGTGATTAAGCGCGGTGGGTTGGTGGCAGTGGCGGCGGCATACAATGGGATCAAGAGATTGGGGGCTGTGTTAAGAGAAGGGTCAGAGAGGGCAAGGGAAAGCGCGGCGGCGACACTGGTGACAATGTGCCGGAAAGGGGGGTCCGAGGTTGTTGGGGAGTTGGCGGCGATTCCCGGTGTAGAGAGAGTAATTTGGGAGATAATGGCTGTTGGAAGCGTCCGGGGGAGGAGAAAGGCAGCAACATTATTGAGAATCCTACGGCGGTGGGCGGCTGGGTTAGATGGTGGAGAGATAGAAGGGTTTTCAACAACCACCATGACTTCGGCAACCACTACCGTGGTTGTTCCAACATCCAATTCAATAGCACAGTAA 2106 0.5275 MAISPQIFPPRKRRPSMESFISPKLNDLNLLHSLLHLTTQISSINPSTTLFLLKRNAIAVVRKAKLLAVLFEDLIRNSDTALASSSSSSSFLLCLEETYIVLHRIKTLIEDCSNGSKFFFLMQIETVADNFHKLTGELSTLLDIFPVHDLDLNDDVQELVILIRKHCSQSKSVIEDSETELRNEVVSVLERIKNEIVPDQSRLASIFERLQIRDSSSCRAEIESLEDEIQNRSDENSKSEIVALIGLVRYAKCVLFGASTTAAASSAVEAQRRKQPSELVVPADFRCPISLELMRDPVVVATGQTYDRESIKLWMDSGHNTCPKTGQTMAHTELIPNRALRNMIALWCREQKIPFDAETVTGRPSSRVTNKAALEATRMTALFLVNKLKVPVTNSQSMEDSNGVVYELRFLAKTDSDSRACIAEAGAIPLLVRYLSFDVGVHSPSLQVNAVTTILNLSILEANKTRIMETDGALNGVAEVLRSGATWEAKANAAATVFSLSGVPAYRKRLGRKTRVVNGLVQLARCGPEGPRRDALAAILSLAADRESVAKLVEGGAVEMAVEVMAAVPEEAATVLEAVIKRGGLVAVAAAYNGIKRLGAVLREGSERARESAAATLVTMCRKGGSEVVGELAAIPGVERVIWEIMAVGSVRGRRKAATLLRILRRWAAGLDGGEIEGFSTTTMTSATTTVVVPTSNSIAQ 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc20g00017 701 FunFam RING-type E3 ubiquitin transferase 367 559 - -
Stsc20g00017 701 Gene3D - 377 590 IPR011989 -
Stsc20g00017 701 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 472 IPR000225 GO:0005515
Stsc20g00017 701 PANTHER U BOX DOMAIN-CONTAINING 54 665 - -
Stsc20g00017 701 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Stsc20g00017 701 Pfam Armadillo/beta-catenin-like repeat 416 458 IPR000225 GO:0005515
Stsc20g00017 701 Coils Coil 215 242 - -
Stsc20g00017 701 SUPERFAMILY RING/U-box 280 354 - -
Stsc20g00017 701 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 358 IPR013083 -
Stsc20g00017 701 CDD RING-Ubox_PUB 282 334 IPR045210 -
Stsc20g00017 701 Pfam U-box domain 281 352 IPR003613 GO:0004842|GO:0016567
Stsc20g00017 701 FunFam RING-type E3 ubiquitin transferase 277 354 - -
Stsc20g00017 701 SUPERFAMILY ARM repeat 394 664 IPR016024 -
Stsc20g00017 701 SMART arm_5 415 459 IPR000225 GO:0005515
Stsc20g00017 701 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc20g00017 Stsc-Chr20 119660 121938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc20g00017 9 699 U-box Gene Family AT5G01830 56.277 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc20g00017 - - tpra:123922727 918.687