Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc20g00015 ATGTTAGGGACACAAAACAACACCGTCGTAGACGCATCTGCTTCAAACGACGATGCAGCAGCAGCATCAAACAGCGTCGTTTTGTTCGGCAAATACGAAATTCTGAAACTGCTTGGAGTAGGCGCCTCGGGAAAAGTGTACCACGCGCGGCGCGTTGACACTGGTGAGAGCGTGGCGATTAAGGCCGTTAGCAAGCGCCACCTCGACGGCAGAGACGGTTACGCTTACGCGGCTCAAATCGAGCGCGAAATTTCTATCATGCGCCGGATGCGCCACCCGCACACCGTGAGGCTCTTTGAGGTACTTGCCACGAAGGCCAAGATTTACTACGTCATGGAGTACGCCGCCGGCGGCGAGCTTCTCCGCCGTGTCTCCGCCGACGGGAGGATGACGGAGAATCTCGCCAGAAGATACTTCCAGCAGCTGATCTCCGCCGTCGCGTATTGCCACTCTCACGGCGTCTTCCACCGCGATCTCAAGCTTGAGAATCTCCTCGTCGACGAGAACATGGATTTGAAAGTAACAGATTTCGGGTTGAGTGCGGGTCGGAGTCAAGTCGGGTCGGACGGGTTGTTACACACGGTTTGCGGTACTCCTGCTTACGTGGCACCTGAGATTCTCGCGAAAAAAGGCTACCGTGGAGTCAGCGTTGACATTTGGTCTTGCGGTGTAATTTTATTCACTCTTGTTGCGGGGTATTTACCCTTCAATGATTACAATATTACCCTTCTGTACAGAAAGATTTACCGAGGGCAGTTTCGGTATCCTAAGTGGGTATCCAGTGAATTTAAGCACTTGGTGTCTAGGTTGTTAGATAGGGATCCCGAGACGAGAATTACTATTGACGAGATTATGAAGGATCCGTGGTTTTGTCGGGGCGGGTATAAGTACCCGACCCGGGTGATGCCCGAGTTGGATGAGGACCACGTGGTGGTGAAAGATTTGAACGCATTTGATTTGATTTCTTTCTCATCCGGGTTTGACATTTCGGGTTTGATGACCCACTCGGAGTATTTGAATTGCGTGGAGCGGTTTGTTTCTAAAGAGAAGCCGGAAAGGATATTGGAGAGGGTGAAGGGGATGGTGGGTAAGGTGGAAAGAGTGGTAGTGAGAAAAGACGAAAATGCCATTATAGGAGTGAAGTTGGAGGGTTTAGATGGTAATTTTGTGATTGCTGTTAGGATTTATCGGTTAATGAGTGAATTGGTGGTTATTGAGGTAAAAAGAAAAGAGAAGAAAGTGGGAGGTGGAAATTTTTGGAGGACTCTGTTGAGACCTTTACTTCTTGAATTGGCTCTTCTTCATGAAAGTGCTCCCAAATAA 1323 0.4943 MLGTQNNTVVDASASNDDAAAASNSVVLFGKYEILKLLGVGASGKVYHARRVDTGESVAIKAVSKRHLDGRDGYAYAAQIEREISIMRRMRHPHTVRLFEVLATKAKIYYVMEYAAGGELLRRVSADGRMTENLARRYFQQLISAVAYCHSHGVFHRDLKLENLLVDENMDLKVTDFGLSAGRSQVGSDGLLHTVCGTPAYVAPEILAKKGYRGVSVDIWSCGVILFTLVAGYLPFNDYNITLLYRKIYRGQFRYPKWVSSEFKHLVSRLLDRDPETRITIDEIMKDPWFCRGGYKYPTRVMPELDEDHVVVKDLNAFDLISFSSGFDISGLMTHSEYLNCVERFVSKEKPERILERVKGMVGKVERVVVRKDENAIIGVKLEGLDGNFVIAVRIYRLMSELVVIEVKRKEKKVGGGNFWRTLLRPLLLELALLHESAPK 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc20g00015 440 SMART serkin_6 32 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc20g00015 440 CDD CIPK_C 316 411 - -
Stsc20g00015 440 SUPERFAMILY Protein kinase-like (PK-like) 28 301 IPR011009 -
Stsc20g00015 440 ProSiteProfiles Protein kinase domain profile. 32 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc20g00015 440 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 24 409 - -
Stsc20g00015 440 Gene3D Kinase associated domain 1, KA1 310 432 - -
Stsc20g00015 440 Gene3D Transferase(Phosphotransferase) domain 1 117 293 - -
Stsc20g00015 440 FunFam Aurora kinase A 25 118 - -
Stsc20g00015 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Stsc20g00015 440 Pfam Protein kinase domain 32 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc20g00015 440 Pfam NAF domain 314 371 IPR004041 GO:0007165
Stsc20g00015 440 Gene3D Phosphorylase Kinase; domain 1 17 116 - -
Stsc20g00015 440 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165
Stsc20g00015 440 FunFam Maternal embryonic leucine zipper kinase 24 319 - -
Stsc20g00015 440 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc20g00015 Stsc-Chr20 101158 102480 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc20g00015 19 410 CBL-interacting serine-threonine protein kinases AT2G30360 55.276 2.85e-155 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Stsc20g00015 Pkinase 1.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc20g00015 - K12761 gmx:100788245 450.669