Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc20g00013 ATGGAAGAGAAAGGAGGTGTGCTTATGCAACGATACGAATTAGGTAGATTGTTAGGCCAAGGAAATTTCGCCAAAGTTTACCATGGAAGGAGCCTTGTATCCGGAATGAGTGTGGCGATCAAAATAATCGATAAAGAGAAGGTTCTGAAAGTGGGGATGATTGATCAGATTAAGCGTGAAATTTCGGTGATGAGACTAATCAGGCATCCACATGTGGTTGAGCTTTATGAGGTCATGGCCACCAAAACCAAGATCTACTTTGTCATGGAATATGTTAAAGGCGGCGAGCTCTTCAACAAGGTATTGAAAGGAAAGCTCAAGATGGAAGATGCTAGGAGATACTTTCAGCAATTGATCAGTGCTGTTGACTACTGCCACAGCCGAGGTGTTTGCCACCGCGATCTCAAGCCGGAGAATCTTCTATTGGATGAAAATGGGAATTTGAAGGTCTCAGATTTCGGTTTAAGCGCGATTGCTGAATCTAGACACCAAGATGGACTACTCCACACCACATGTGGCACCCCTGCCTATGTTGCCCCAGAAGTGATACTTAGAAAGGGCTATGATGGCACCAAAGCCGATATATGGTCTTGTGGGGTCATACTCTATGTTCTATTGGCAGGTTATCTTCCTTTCAGAGATTCGAATCTGATGGAAATGTATAAGAAGATTGGAAAGGGACAATTCAAGTTTCCTGCTTGGTTTCCTCCTGATGTGAAGAGATTACTGTCTAGAATCTTGGATCCTAATCCGAGGACAAGGATATCAATGGCGAAAATCATGGAAAGTTCATGGTTCAAGAAAGGGTTAGAGAAGCCAATTGTTGTTGCTAATGAGAATGAAGACAAAGAGCTTGCCCCCTTGGATGCTGATGGAGTGTTCGGATCATGCGAAAATGGCGGCCCTGCTGCTGAATCAACACATGAGCTGTCAAAGCCTAGCAACTTAAATGCATTCGATATTATCTCTTATTCCTCGGGATTCGACTTGTCCGGGTTATTCGAGGAAACTGATCAGAAGAAACAAGTCAGGTTCACATCTAACAAGCCTGCATCAATCATAATCTCTAAGTTAGACGAAATTTGCAAGCGCCTTCGGCTGAAAGTTAAGAAGAAAGATAGAGGTTTGCTGAAGCTGGAAGGCTCTAATGCTGGCAGGAAAGGGCCGTTGGGAATCGACGCGGAGATTTTCGAGATCACGCCGGTGTTCCACCTTGTTGAACTCAAGAAATCAAGTGGAGACACATTGGAATACCAAAAGCTGCTAAAACAAGAAGTTAGGCCTGCACTTAAGGACATTGTTTGGAACTGGCAAGGAGAAGAACCACAGCAACTTCACCAACAAGAAATGCTGCAGATACAGCAACAAAATCATTCACAATCTGCTCAATCAGATGTGATAACACAATCAAATTAG 1416 0.4357 MEEKGGVLMQRYELGRLLGQGNFAKVYHGRSLVSGMSVAIKIIDKEKVLKVGMIDQIKREISVMRLIRHPHVVELYEVMATKTKIYFVMEYVKGGELFNKVLKGKLKMEDARRYFQQLISAVDYCHSRGVCHRDLKPENLLLDENGNLKVSDFGLSAIAESRHQDGLLHTTCGTPAYVAPEVILRKGYDGTKADIWSCGVILYVLLAGYLPFRDSNLMEMYKKIGKGQFKFPAWFPPDVKRLLSRILDPNPRTRISMAKIMESSWFKKGLEKPIVVANENEDKELAPLDADGVFGSCENGGPAAESTHELSKPSNLNAFDIISYSSGFDLSGLFEETDQKKQVRFTSNKPASIIISKLDEICKRLRLKVKKKDRGLLKLEGSNAGRKGPLGIDAEIFEITPVFHLVELKKSSGDTLEYQKLLKQEVRPALKDIVWNWQGEEPQQLHQQEMLQIQQQNHSQSAQSDVITQSN 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc20g00013 471 Gene3D Kinase associated domain 1, KA1 317 436 - -
Stsc20g00013 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Stsc20g00013 471 CDD STKc_SnRK3 11 265 - -
Stsc20g00013 471 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Stsc20g00013 471 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Stsc20g00013 471 Gene3D Transferase(Phosphotransferase) domain 1 5 316 - -
Stsc20g00013 471 FunFam Non-specific serine/threonine protein kinase 2 289 - -
Stsc20g00013 471 Pfam NAF domain 313 371 IPR004041 GO:0007165
Stsc20g00013 471 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Stsc20g00013 471 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc20g00013 471 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Stsc20g00013 471 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc20g00013 471 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc20g00013 471 FunFam Non-specific serine/threonine protein kinase 311 435 - -
Stsc20g00013 471 CDD CIPK_C 317 431 - -
Stsc20g00013 471 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc20g00013 Stsc-Chr20 88334 90383 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc20g00013 1 443 CBL-interacting serine-threonine protein kinases AT5G58380 65.435 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Stsc20g00013 Pkinase 1.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc20g00013 K07198 - gmx:100815651 771.155