Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc20g00008 ATGGCATCATCACATGGGAATTTTTCATTTATTGTAAGTGCTTTGGTGATTGCAATTGTAGCTAGCAATGGTTTTTCATCAGAACTAACAGGAAATTACTATGAGAATTCATGCCCAAATGCTTTGAGTACCATCAAAAGTGTTGTGGAGGCTGCCGTACAGAAAGAACGCCGTATGGGTGCTTCTTTGCTTCGCTTGCACTTCCATGATTGCTTTGTTAATGGTTGTGATGGTTCAATTCTTCTGGATTCCACAGCCACAATTGAAAGTGAAAAGAGTGCAAGGCCTAATAACAACTCAGTTCGAGGATTTGAAGTGGTGGATAAAATCAAGCAGGCAGTGGATCAAGCTTGTGGAAAGCCAGTTGTTTCTTGTGCAGACATTTTAGCTGTTGCTGCCAGAGATTCCGTGGTTGCCCTAGGAGGTCCGACATGGGATGTAAGACTAGGAAGAAGAGACTCCACCACAGCAAACCCTAACGGCGCGAACACGAACCTTCCGGCGCCATCTCTGAACCTCACCCAACTTATCAAGAGCTTCCAAGATCAAGGCCTAGATGAGAAGGACCTAGTGGTTCTCTATGGAGCACACACCATAGGCTTTGCACGTTGTGTTACATATAGGGGCCATATTTACAATGACACAAACATTGATCCCAATTTTGCAAATTCTCTTAAGTACATTTGCCCTAGGGATGTTGGAGTTGGTGATGGTAATCTTGCTCCTTTGGATTGCACGGCTACAAAGTTTGATTCTCAATATTATAGTGATTTGATTAGCAAGAAGGGTCTTCTTCATTCTGATCAAGAGTTCTTCAATGGTGGCTCCACGGATCAATTGGTTAAGGAATATAGCTATAATTCCGAAGCTTTCTTTCAAGATTTTGGGAATTCTATGATTAAGATGGGAAATATTCAGCCACTAACTGGGGATCAAGGTGAAATTCGTGGTAATTGCAGGAGAGTCAATAATTAA 975 0.4215 MASSHGNFSFIVSALVIAIVASNGFSSELTGNYYENSCPNALSTIKSVVEAAVQKERRMGASLLRLHFHDCFVNGCDGSILLDSTATIESEKSARPNNNSVRGFEVVDKIKQAVDQACGKPVVSCADILAVAARDSVVALGGPTWDVRLGRRDSTTANPNGANTNLPAPSLNLTQLIKSFQDQGLDEKDLVVLYGAHTIGFARCVTYRGHIYNDTNIDPNFANSLKYICPRDVGVGDGNLAPLDCTATKFDSQYYSDLISKKGLLHSDQEFFNGGSTDQLVKEYSYNSEAFFQDFGNSMIKMGNIQPLTGDQGEIRGNCRRVNN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc20g00008 324 FunFam Peroxidase 167 302 - -
Stsc20g00008 324 CDD secretory_peroxidase 28 322 IPR033905 GO:0004601|GO:0042744
Stsc20g00008 324 ProSiteProfiles Plant heme peroxidase family profile. 28 323 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc20g00008 324 SUPERFAMILY Heme-dependent peroxidases 29 323 IPR010255 GO:0004601|GO:0006979|GO:0020037
Stsc20g00008 324 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601
Stsc20g00008 324 Gene3D Peroxidase, domain 2 167 302 - -
Stsc20g00008 324 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc20g00008 324 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc20g00008 324 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc20g00008 324 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc20g00008 324 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc20g00008 324 PANTHER PEROXIDASE 72-RELATED 26 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00008 324 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00008 324 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00008 324 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00008 324 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00008 324 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00008 324 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00008 324 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00008 324 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00008 324 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00008 324 FunFam Peroxidase 32 175 - -
Stsc20g00008 324 Pfam Peroxidase 46 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc20g00008 324 Gene3D - 32 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc20g00008 Stsc-Chr20 54639 56425 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc20g00008 27 323 Peroxidase AT5G05340 59.396 5.58e-131 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc20g00008 K00430 - gmx:100802035 476.478