Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc20g00006 ATGGCTACAACATTTTCTGGCTTCAAACTAGGAATATGTTTGTTGTTTTGTGTTGTAGGGTTAGCACTAGCAGAGTTACAACCTAGTAACTTCTATGAGGAACGGTGTCCTAAAGCCCTTTCAATCATCAAGACAGCAGTGAATCTTGCTGTGTTGAAAGAGCGTAGAATGGGTGCATCATTGCTCCGTCTTCATTTCCATGATTGCTTTGTTCAAGGATGTGATGCTTCAGTATTGTTAAGTGACACAGCAACTTTCACCGGTGAACAAAATGCTTTGCCGAATAAAAATTCTCTAAGGGGTTTCAATGTTATAGAGAGCATTAAATCCGCACTTGAGTTTATTTGCCCTGGTGTTGTTTCTTGTGCTGACATTCTAGCTGTTGCTGCAAGAGATTCGGTTGTTGCTGTAAGTGCTCACACAATAGGGAAAGCGAGATGTACAACTTACAGATCAAGGATTTACAATGAAACCAACATAGATCCCTATTTTGCAAAATCAATGCAAAAAATTTGCCCAATTTCAGGTGGTGATAACAACTTAGCCTCTTTGGATACTAACATCCCAATAATTGATCTATTTGACAATGGATACTTCAGAGATTTAGTGAATAAAAAGGGTCTTTTGCATTCGGATCAAGTACTCTTCAATGGTGGTTCCACAGATTCACAAGTTCAAAGTTATGTGAAGAATCCAATTCTCTTCCAATTTGATTTTGCTAAGGCAATGGTTAAGATGGGGAAACTTAGCCCACTAATCTCACCCAATGCTCTTGCTACAACATCTTTCTCATCTTCATCATCATCATTATTATCACCAAATTATTATGGACATTCATGCCCTCAGGCTTTGAGCACCATAAGAAGAGTGGTGGAGAATGCTGTTCAAAGAGAGCCACGTATGGGTGCTTCTTTGCTACGCTTGCACTTCCATGATTGCTTTGTTAATGGCTGTGATGGTTCAATTCTTCTAGACCCTACATCCACCATCGACAGTGAAAAAAATGCATTTCCTAATAAAGACTCTGTTAGAGGATTTGAAGTGGTGGACGAAATCAAGGAGGCAGTCGATAAAGCTTGTGGAAAACCAATTGTTTCTTGTGCTGATATTTTGGCAGTTGCTGCTAGAGATTCTGTTGTTGCGTTAGGAGGGCCAACATGGAAGGTGAGACTTGGTAGAAGAGACTCAACCACAGCAAGCCGCAATGATGCAAACAACAACCTTCCCATACCATCTTTTAGCCTCTCTCAACTCATTTCAAACTTCAACAACCATGGCCTAAATGAGAAGGACCTTGTGGTTCTCTCCGGTGCCCACACAGTCGGTTTTGCACGTTGTGTTTCTTTCGAGGAACATATCTACAATGATACCAACATCAATCCTTACTTCGCTAAGAGGCTCAAGTTCATTTGCCCTAAAAACGGTGGTGGAAACCCTAATGTTCTTGCCCCACTGGACATGGCCACGGCCGTTAACTTTGATGCCGCCTACTATGGTGACTTGGTTCACAAGCAAGGGCTTTTGCATTCTGATCAAGAATTGTTTAACGGTGGATCCACGGATGGATTGGTTAAGAAATATTGGCGTGATCCTAAAGCGTTTTATAACGACTTTGGTGAATCTATGGTTAAGATGGGAAATATAAAGCCACTCACTGGAGATCATGGTGAAATTCGTTTGAATTGTAGAAAAGTGAATAAAGATTATTAA 1710 0.407 MATTFSGFKLGICLLFCVVGLALAELQPSNFYEERCPKALSIIKTAVNLAVLKERRMGASLLRLHFHDCFVQGCDASVLLSDTATFTGEQNALPNKNSLRGFNVIESIKSALEFICPGVVSCADILAVAARDSVVAVSAHTIGKARCTTYRSRIYNETNIDPYFAKSMQKICPISGGDNNLASLDTNIPIIDLFDNGYFRDLVNKKGLLHSDQVLFNGGSTDSQVQSYVKNPILFQFDFAKAMVKMGKLSPLISPNALATTSFSSSSSSLLSPNYYGHSCPQALSTIRRVVENAVQREPRMGASLLRLHFHDCFVNGCDGSILLDPTSTIDSEKNAFPNKDSVRGFEVVDEIKEAVDKACGKPIVSCADILAVAARDSVVALGGPTWKVRLGRRDSTTASRNDANNNLPIPSFSLSQLISNFNNHGLNEKDLVVLSGAHTVGFARCVSFEEHIYNDTNINPYFAKRLKFICPKNGGGNPNVLAPLDMATAVNFDAAYYGDLVHKQGLLHSDQELFNGGSTDGLVKKYWRDPKAFYNDFGESMVKMGNIKPLTGDHGEIRLNCRKVNKDY 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc20g00006 569 Gene3D Peroxidase, domain 2 409 545 - -
Stsc20g00006 569 SUPERFAMILY Heme-dependent peroxidases 30 257 IPR010255 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Stsc20g00006 569 Gene3D - 274 566 - -
Stsc20g00006 569 PRINTS Haem peroxidase superfamily signature 383 395 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 PRINTS Haem peroxidase superfamily signature 431 446 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 PRINTS Haem peroxidase superfamily signature 486 501 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 PRINTS Haem peroxidase superfamily signature 302 316 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 PRINTS Haem peroxidase superfamily signature 365 382 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 FunFam Peroxidase 126 246 - -
Stsc20g00006 569 FunFam Peroxidase 274 414 - -
Stsc20g00006 569 ProSitePatterns Peroxidases active site signature. 302 313 IPR019794 GO:0004601
Stsc20g00006 569 ProSiteProfiles Plant heme peroxidase family profile. 270 566 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 ProSitePatterns Peroxidases proximal heme-ligand signature. 431 441 IPR019793 -
Stsc20g00006 569 Pfam Peroxidase 46 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 Pfam Peroxidase 288 529 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 Pfam Peroxidase 137 230 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 SUPERFAMILY Heme-dependent peroxidases 271 566 IPR010255 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 FunFam Peroxidase 409 545 - -
Stsc20g00006 569 PANTHER PEROXIDASE 72-RELATED 269 565 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 PRINTS Plant peroxidase signature 280 299 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 PRINTS Plant peroxidase signature 304 324 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 PRINTS Plant peroxidase signature 383 398 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 PRINTS Plant peroxidase signature 540 553 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 PRINTS Plant peroxidase signature 364 374 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 PRINTS Plant peroxidase signature 484 499 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 PRINTS Plant peroxidase signature 344 357 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 PRINTS Plant peroxidase signature 430 442 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 PRINTS Plant peroxidase signature 500 517 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc20g00006 569 CDD secretory_peroxidase 25 252 IPR033905 GO:0004601|GO:0042744
Stsc20g00006 569 CDD secretory_peroxidase 273 565 IPR033905 GO:0004601|GO:0042744
Stsc20g00006 569 Gene3D - 28 174 - -
Stsc20g00006 569 ProSiteProfiles Plant heme peroxidase family profile. 30 252 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc20g00006 Stsc-Chr20 41556 46923 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc20g00006 271 566 Peroxidase AT5G05340 58.108 1.82e-123 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc20g00006 K00430 - ncol:116260651 488.034