Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc20g00001 ATGTCTTCAAGGGGGAGAAAAAAGGCAGCTACGCAGCGCATGTTGCAACAACTTCGAACCGCCACTAATTCCACTTCTATGAACAAAGCCTCTATTATTGTGGATGCTACCAAATACATAGAAGAGTTGAAGCAAAAGGTGGAAGGAATTAATAACTCAGAGCTAGGAACCGTTGAATCTTCATCATCAACCTCCCAGGATCAATTACCAATGGTGACGGTAGAAACCCTAGAAAGGGGTTTTCTGATTAATGTGTTTTCAGAAAGGAATTGCCCCGGTATGCTTGTAGCAATACTTGAGGCTTTTGAAGAACTGGGTCTTGATGTTCTTGATGCTAGGGTTTCTTGTGAAGACAATTTCCAGCTAGAAGCTGTGGGAGGAGAAGGTCAAGATCAGAACGAGAGCATCGATGCGCAAGTGGTCAAGCAAGCAGTGTTGCAAGCAATCAATAACATGAATTAA 462 0.4286 MSSRGRKKAATQRMLQQLRTATNSTSMNKASIIVDATKYIEELKQKVEGINNSELGTVESSSSTSQDQLPMVTVETLERGFLINVFSERNCPGMLVAILEAFEELGLDVLDARVSCEDNFQLEAVGGEGQDQNESIDAQVVKQAVLQAINNMN 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc20g00001 153 CDD ACT_UUR-ACR-like 92 149 - -
Stsc20g00001 153 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc20g00001 Stsc-Chr20 6135 8606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc20g00001 1 128 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 26.708 9.79e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc20g00001 - - ccaj:109816195 232.646