Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc208g00004 ATGGATCCTCCACTCATTAACGACTCTACATTCTCTGCTGCCAATCCTTCATCTTACACTCTTTCCGAGATTTGGCCCTTCTCCTCCTCAGGCCTCGGTCTCCGAATGCCCAATTTCGGAGGACAAGACGGTAATTTCTCACCCTTTCAAGATTCCTCCTCTCAGAATCATAACCATAACCACTCCTCCCTCCTCCGAGACGCTTCCGCTGACGAGTCCACCTTCACCGACCTCAGCACCGCCGCAGTTGCCACCCGAAATCACCGCAAGAGGAAAGGCTCATCCGTTGCCGCCGCCGCCTCCGAGGACGACTCCTCCAGGATGGTTTCCACAAGCTCCGCCAACGACTTGAATGATTCTGACATTAAAAGGATAAAACTAGGAGGATCAGTCAACGAGAATGATGCTTCAAAAACGGAAGTAGAAGCAAGTTCAGTAGCTGGCGACAAGTCGGCCCAACAAAGCAGCAAGTCCTGTGAGCCACCTAAACAAGATTATATCCACGTGAGAGCAAGAAGAGGCCAAGCTACTGATAGTCACAGTCTAGCAGAGAGAGCAAGAAGAGAAAAGATCAGTGAGAGGATGAAAATTCTTCAGGATTTGGTTCCAGGGTGTAACAAGGTAATTGGTAAAGCTCTTGTCCTGGACGAAATCATCAATTATATTCAGTCACTGCAGCGTCAAGTTGAGTTCCTGTCAATGAAGCTTGAGGCAGTTAATTCAAGATTAAACGTGAACCCGACAATTGATGGGTTCTCTTCAAAAGATGTTGCCACTCAGCCATTTGACATTGCTGGAATGATAATCGGATCACCCGCATCTAGGGGCTATGCTCAGGGATCGCAACTTGGATGGCTGCATATGCAGATAGGTAGTGATTTCGGGAGAACAACATAA 897 0.4805 MDPPLINDSTFSAANPSSYTLSEIWPFSSSGLGLRMPNFGGQDGNFSPFQDSSSQNHNHNHSSLLRDASADESTFTDLSTAAVATRNHRKRKGSSVAAAASEDDSSRMVSTSSANDLNDSDIKRIKLGGSVNENDASKTEVEASSVAGDKSAQQSSKSCEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNVNPTIDGFSSKDVATQPFDIAGMIIGSPASRGYAQGSQLGWLHMQIGSDFGRTT 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc208g00004 298 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 61 267 IPR024097 GO:0006355
Stsc208g00004 298 MobiDBLite consensus disorder prediction 133 161 - -
Stsc208g00004 298 Coils Coil 222 242 - -
Stsc208g00004 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 225 IPR011598 GO:0046983
Stsc208g00004 298 MobiDBLite consensus disorder prediction 84 116 - -
Stsc208g00004 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 244 IPR036638 GO:0046983
Stsc208g00004 298 MobiDBLite consensus disorder prediction 99 116 - -
Stsc208g00004 298 Pfam Helix-loop-helix DNA-binding domain 179 226 IPR011598 GO:0046983
Stsc208g00004 298 CDD bHLH_AtBPE_like 165 250 - -
Stsc208g00004 298 FunFam Basic helix-loop-helix transcription factor 172 244 - -
Stsc208g00004 298 MobiDBLite consensus disorder prediction 43 62 - -
Stsc208g00004 298 Gene3D - 172 248 IPR036638 GO:0046983
Stsc208g00004 298 MobiDBLite consensus disorder prediction 36 62 - -
Stsc208g00004 298 SMART finulus 181 231 IPR011598 GO:0046983
Stsc208g00004 298 MobiDBLite consensus disorder prediction 133 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc208g00004 Stsc-Chr208 11203 16833 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc208g00004 1 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 54.605 4.14e-82 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc208g00004 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc208g00004 - - zju:107418528 362.459