Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc207g00003 ATGTCAACTGCGCCCGCCCCTTCTTCGCCGCCGGCGGGTAACTCTACCGCCCCGCCGCCATCCACTCCTGCCACGCCTTCTGCTCCGGCACCAACCACTCCTTCAAATCCGCCACCGGCTACTCCCTCCTCGCCGCCACCTGCCACTCCCTCCTCCCCGCCGCCGGCAACTCCATCTTCGCCACCTCCGGCAACACCCTCAGCTCCACCTCCGGCCACTCCATCTACCTCCCCGCCTCCAGCAACTCCTTCAACGCCGTCTACCTCGCCTCCGAAAGCATCTCCCGCCACTCCATCGACCTCTCCGCCGTCGCCGCCGTCTCCGTCTTCCGGCGGAAGCACCACTCCCAGTCCACCTTCTCGTGGCTCTCCTTCTCCCCCATCTTCCGGCGGCAAAACGCCATCTTCGTCCAAGTCTCCGCCGTCGTCGTCGTCCCCATCGCCACCTCCATCATCTTCATCGGGCATTTCCACAGGAGTTGTGGTCGGAATCGCCGTTGGTGCTGTAGCAGTTCTTGTGGTCCTTAGCGTTCTCTGCATATGCTGCAGGAAGAAAAAGAGAAGACGCGACGAGGAGCGCTACTACGGTTACCCACCGCCTCAGCAGCCGCCACGTGGACCCAAAGATGACTATGGTGGTCCCCAACACCAGTGGCAGCACAATGCTCCGCCTCCTTCAGATCACGTGGTCTCCGTCCAGCCACCGAAGCCATCGCCTCCGCCTCCTGCTGTCACGCGGCCTCCGCCGGTGTACCAACCTCCACCACCACCTCCACCTTTCATGAGCAGCAGTGGCGGCTCTGGATCAAACTATTCAGGTGGTGAGCCACTTCCACCTCCTTCTCCAGGCATTGCATTAGGCTTCTCAAAGAGCACTTTCACATACGAGGAGCTGGCGCGAGCAACCGATGGATTCTCCGACGCCAACCTCCTCGGATCGGGTGGGTTCGGGTATGTGCATAGAGGAATCCTCCCCAACGGTAAGGAAGTGGCGGTGAAGCAGCTGAAGGCCGGTAGCGGACAAGGAGAGCGTGAATTCCAAGCTGAAGTAGAGATAATTAGTCGTGTTCATCACAAGCACCTTGTTTCTTTGGTTGGGTACTGCATCACCGGGACCCAGAGGCTGCTTGTTTATGAATTTGTCCCCAACAACACGTTGGAATTCCATTTACATGGGAGAGGCCGACCTACAATGGATTGGCCCACAAGACTTCGAATTGCTTTAGGATCTGCTAAAGGGCTGTCGTATCTCCATGAAGATTGTCATCCTAAGATCATTCATCGTGATATCAAATCTGCTAACATTCTTCTCGATTTTAAGTTTGAAGCTAAGGTTGCTGATTTCGGGCTTGCAAAGTTCTCTTCTGATGTCAACACTCATGTTTCCACCCGAGTGATGGGGACTTTCGGGTATCTGGCTCCGGAATATGCTTCCAGTGGAAAACTCACAGACAAATCAGATGTTTTCTCCTATGGAGTCATGCTTCTCGAGTTAATTACTGGAAGAAGGCCTGTTGATAAAAACCAAACTTTCATGGAGGATAGTTTGGTAGACTGGGCTAGGCCTTTGCTCAACCGTGCCTTGGATGAAGATGATTATGACTCTCTAGTTGACCCAAGGCTCCAGAATGAATATGATCCCAATGAGATGGCTCGCATGGTGGCATCTGCCGCTGCTTGCACGCGTCATTCAGCGAAGCGTCGACCAAGGATGAGCCAGGTTGTTCGAGCTCTCGAAGGAGATGTGTCTCTGGCAGATCTCAATGAAGGAGTTAAGCCTGGACACAGTACCATGTATAGTTCTCATGAAAGCTCGGATTATGACACTACACAGTACAAGGAAGACATGAAAAGGTTCAGGAAGATGGCACTGGGAACTCAGGAATATGCCAGCAGCGAGTATAGCGCGCCTACAAGCGAGTACGGCCTGTATCCATCCGGCTCAAGCAGCGAAGGGCAGAGCCGCCAGACCACCCGCGAAATGGAAATGCGGAAGATGAAGAACAGTCAAGGTTTCAGTGGAACTTCGTGA 2031 0.5465 MSTAPAPSSPPAGNSTAPPPSTPATPSAPAPTTPSNPPPATPSSPPPATPSSPPPATPSSPPPATPSAPPPATPSTSPPPATPSTPSTSPPKASPATPSTSPPSPPSPSSGGSTTPSPPSRGSPSPPSSGGKTPSSSKSPPSSSSPSPPPSSSSGISTGVVVGIAVGAVAVLVVLSVLCICCRKKKRRRDEERYYGYPPPQQPPRGPKDDYGGPQHQWQHNAPPPSDHVVSVQPPKPSPPPPAVTRPPPVYQPPPPPPPFMSSSGGSGSNYSGGEPLPPPSPGIALGFSKSTFTYEELARATDGFSDANLLGSGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGTQRLLVYEFVPNNTLEFHLHGRGRPTMDWPTRLRIALGSAKGLSYLHEDCHPKIIHRDIKSANILLDFKFEAKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSYGVMLLELITGRRPVDKNQTFMEDSLVDWARPLLNRALDEDDYDSLVDPRLQNEYDPNEMARMVASAAACTRHSAKRRPRMSQVVRALEGDVSLADLNEGVKPGHSTMYSSHESSDYDTTQYKEDMKRFRKMALGTQEYASSEYSAPTSEYGLYPSGSSSEGQSRQTTREMEMRKMKNSQGFSGTS 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc207g00003 676 MobiDBLite consensus disorder prediction 126 140 - -
Stsc207g00003 676 ProSiteProfiles Protein kinase domain profile. 305 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc207g00003 676 Pfam Protein tyrosine and serine/threonine kinase 310 578 IPR001245 GO:0004672|GO:0006468
Stsc207g00003 676 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 167 638 IPR047117 -
Stsc207g00003 676 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Stsc207g00003 676 MobiDBLite consensus disorder prediction 629 656 - -
Stsc207g00003 676 Gene3D Phosphorylase Kinase; domain 1 285 380 - -
Stsc207g00003 676 MobiDBLite consensus disorder prediction 629 676 - -
Stsc207g00003 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Stsc207g00003 676 MobiDBLite consensus disorder prediction 189 285 - -
Stsc207g00003 676 SMART serkin_6 305 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc207g00003 676 MobiDBLite consensus disorder prediction 1 157 - -
Stsc207g00003 676 FunFam Proline-rich receptor-like protein kinase PERK1 381 589 - -
Stsc207g00003 676 FunFam proline-rich receptor-like protein kinase PERK1 283 380 - -
Stsc207g00003 676 SUPERFAMILY Protein kinase-like (PK-like) 282 578 IPR011009 -
Stsc207g00003 676 Gene3D Transferase(Phosphotransferase) domain 1 381 589 - -
Stsc207g00003 676 MobiDBLite consensus disorder prediction 228 262 - -
Stsc207g00003 676 MobiDBLite consensus disorder prediction 11 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc207g00003 Stsc-Chr207 10392 14092 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc207g00003 124 659 Trihelix Transcription Factor Family AT1G70460 51.024 8.93e-179 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc207g00003 PK_Tyr_Ser-Thr 3.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc207g00003 - - gmx:100781944 839.721