Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc205g00006 ATGGCTGGTAGTAGCATAGTTCCAATACTTGATTCCATTCCTGTTGGATTCAGATTCAAGCCAACAGATGAAGAGCTTGTGAGTTACTACCTCAATCACAAGCTCCTAAATGATGATTCCCCTATCGATATTATCCCAGACATTGATCTTTGCAAGGTTGAACCTTGGGACATACCAGCATTATCCAAGATAAAATCGGATGATCCAGAATGGTTTTTCTTTAGTGGAAGAGATTATAAGTATGGAAAGAGCAAAAGAGCAAACAGGGCCACCAAAAATGGGTATTGGAAAGCCACTGGACAAGACAGGTACATAAAGGAAAGGGCCACTAACAAGGTTATTGGAAGCAAGAAGACACTTGTTTTCTATAAAGGTCGCGTTCCTGGTGTCAAAACCAATTGGGTTATCCATGAGTATCATGCTATTACCTTTCATGATAGCCAGAGGAATTTTGTTTTGTGTCGCTTGATGAAGAAAGCTGAGAACAAATCTGAAGAGGGAACTGATGCACAAGCATGTGATAATGATAAAGGGGAACCTAGCAATCACATGGAAGAGGCAGATGAGAGAGTCTCAAATATGCTTGATTTGCCGGAAGTGAGCATGGATTCGATCTTCCACGCACTGGCTCGAGCCGGATCATCATCACAGCAGCATTCTCCAATTAGCATTGAACAGCAAGAGTCCTTCCCAGTCTCCCCATTTGAAAATCATTACCTTGTAAATGAAGATAACAGTATGCATATTCAATTTGAAACTGATGAAGAGAAGCAAGATGCAGATGAATTTGTGGATTCGATTTGGGGTGATGGCAAGTTAGCTATTTGGGAAGAAAGACAGCAGCAACATGCTTCCCTAAATAATCAAATCTTCTCGGCCTCGTCGATGAGGGTATGCTATGAAAGCGGTGACACAGATGCTGAAGTAGTCTCTAGACCGGCTAGCTCAAGAGAGTTCCATGTAGCAAAAATGGTTCAACCATCACATACAGAAAAAACTACAAGTATCTACCAAGAAGACTTTTGGGGAGTGGATTCATCTTCATGTGACTCGAATTCAGACAAAGCTTTTGAGATAAACTCTATTGAGATTTCCAGTCCTTCTTCTCCGGCTCTAAGTAGATCGAAAAATCAGTATAACCCGAGACAATCTCAAACACATCGGAAGGTTTCAAGCAATGCAATGTCCCATCTTGAGGTGAGTACACCGAGCAGCCGCACTAAACGACAAAGAAGCCTATCTTGA 1245 0.4177 MAGSSIVPILDSIPVGFRFKPTDEELVSYYLNHKLLNDDSPIDIIPDIDLCKVEPWDIPALSKIKSDDPEWFFFSGRDYKYGKSKRANRATKNGYWKATGQDRYIKERATNKVIGSKKTLVFYKGRVPGVKTNWVIHEYHAITFHDSQRNFVLCRLMKKAENKSEEGTDAQACDNDKGEPSNHMEEADERVSNMLDLPEVSMDSIFHALARAGSSSQQHSPISIEQQESFPVSPFENHYLVNEDNSMHIQFETDEEKQDADEFVDSIWGDGKLAIWEERQQQHASLNNQIFSASSMRVCYESGDTDAEVVSRPASSREFHVAKMVQPSHTEKTTSIYQEDFWGVDSSSCDSNSDKAFEINSIEISSPSSPALSRSKNQYNPRQSQTHRKVSSNAMSHLEVSTPSSRTKRQRSLS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc205g00006 414 MobiDBLite consensus disorder prediction 164 189 - -
Stsc205g00006 414 Gene3D NAC domain 22 164 IPR036093 GO:0003677|GO:0006355
Stsc205g00006 414 ProSiteProfiles NAC domain profile. 13 159 IPR003441 GO:0003677|GO:0006355
Stsc205g00006 414 MobiDBLite consensus disorder prediction 366 414 - -
Stsc205g00006 414 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 267 - -
Stsc205g00006 414 Pfam No apical meristem (NAM) protein 14 140 IPR003441 GO:0003677|GO:0006355
Stsc205g00006 414 SUPERFAMILY NAC domain 9 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc205g00006 Stsc-Chr205 66931 69649 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc205g00006 10 163 NAC Transcription Factor Family AT4G35580 56.522 1.56e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc205g00006 NAM 3.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc205g00006 - - adu:107473112 595.89