Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc205g00004 ATGGCTGGTAGTGCCACACTTCCAATACTTGATTTCATTCCTGTTGGATTCAGGTTCAAGCCAACAGATGAAGAGCTTGTGAGTTATTACCTCAATCCCAAGCTCCTAAATTATAATTTCCCTATTCCTATTATCCCAGATATTGATCTTTGCAAGGTTGAACCTTGGGACATACCAGCATTATCGATAATAAAATCGGATGATCCAGAATGGTTTTTCTTTAGTGGACGAGATTACAAGTATGGAAACAGCAAAAGAGCAAACAGGGCCACCAAAGATGGGTATTGGAAAGCCACTGGACAAGACAGGTACATAAAAGAAAGTGCCACTAACAAAGCTATTGGAAGCAAGAAGACACTTGTCTTCTACAAAGGTCGTGTTCCTGCTGGTGCCAAAACCAACTGGGTCATCCATGAGTATCATGCTACTACCTTTGATGAGAGCAAGAGGAATTTTGTTTTGTGTCGCTTGATGAAGAAATTTGAGAAAAAATCTGAAGAGGGAACTGATGCACAAGCATGTGATAATGATAAAGGGGAACCTAGCAATCACATGGAAGAAGCAGATGAAAGAGTCTCAAATATGCTTGATTTGCCAGATGTGAACATGGATTCGATCTTGAACGCAATGCCTCGAGCCGGATCATCATCGCAGCATTCTCCGATCAGCATTGAACAGCAGCAAGAGTCCTTCCCAGTCTCCCCATCTCAAAATTGTTACCTTGTAAATGAAGATAACAGGATGCATAATCAATTTGAAACTGATGGAGAGAAGCAAGAAGCAGAGGAATTTGTGGATTTGATTTTGAGTGATGGCGATTTAGCTACTTTGGAAGAAAGACAGCAGCAGCAGCATGCTTTCAGTTTCATAAATAATCAAATCTGCTCGATCTCATCGGTGAGGGTACGCTATGAAAGCAGTGACACAGATGCTGAAGTAGTCTCTAGACCGGCTAGTTCAAGAGAATTCCATGTAGCAAAAATGGTTCAACCATCACATACAGAAAAAACTGCAAGTATCTATCAAGAAGACTTTTGGGGAGTGGATTCATCTTCCTGTGACTCAAATGCAGATAAAGCTTTTGAGATAAACTCTATTGAGATTTCTAGTCCTTCTTCTCCGGCTCTAAGTAGATCGAAAAATCAGTATAACCCGAGACGATCCCAAACACATAGGAAGGTTTCAAGCAATGCAATGTTCCATCTTGAGGTGAGAACAGCGAGCAGCCGCGCCAAACGACAAAGAAGCCTATCTTGA 1257 0.4145 MAGSATLPILDFIPVGFRFKPTDEELVSYYLNPKLLNYNFPIPIIPDIDLCKVEPWDIPALSIIKSDDPEWFFFSGRDYKYGNSKRANRATKDGYWKATGQDRYIKESATNKAIGSKKTLVFYKGRVPAGAKTNWVIHEYHATTFDESKRNFVLCRLMKKFEKKSEEGTDAQACDNDKGEPSNHMEEADERVSNMLDLPDVNMDSILNAMPRAGSSSQHSPISIEQQQESFPVSPSQNCYLVNEDNRMHNQFETDGEKQEAEEFVDLILSDGDLATLEERQQQQHAFSFINNQICSISSVRVRYESSDTDAEVVSRPASSREFHVAKMVQPSHTEKTASIYQEDFWGVDSSSCDSNADKAFEINSIEISSPSSPALSRSKNQYNPRRSQTHRKVSSNAMFHLEVRTASSRAKRQRSLS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc205g00004 418 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 258 - -
Stsc205g00004 418 SUPERFAMILY NAC domain 11 160 IPR036093 GO:0003677|GO:0006355
Stsc205g00004 418 MobiDBLite consensus disorder prediction 166 187 - -
Stsc205g00004 418 ProSiteProfiles NAC domain profile. 13 160 IPR003441 GO:0003677|GO:0006355
Stsc205g00004 418 Pfam No apical meristem (NAM) protein 14 141 IPR003441 GO:0003677|GO:0006355
Stsc205g00004 418 Gene3D NAC domain 22 165 IPR036093 GO:0003677|GO:0006355
Stsc205g00004 418 MobiDBLite consensus disorder prediction 370 418 - -
Stsc205g00004 418 MobiDBLite consensus disorder prediction 370 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc205g00004 Stsc-Chr205 52369 55065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc205g00004 10 160 NAC Transcription Factor Family AT4G35580 57.051 1.85e-57 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc205g00004 NAM 4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc205g00004 - - adu:107473112 584.719