Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc205g00003 ATGGCGGATAATTTTCCTGTTGGATACAGGTTCCTTCCAAAAGAAGAGGAGCTTCTTACTTACTACCTCAAAAACAAGATTGAGGGAAATGATTCACTCATCAACAACACCATTTCTCAGATTCATCTCTATAGCTTTGATCCTTGGGACTTGCCAGAACATTCGAAAGTTAAATCGGATGATTCAGAATGGTTTTTCTTCACTGAGTTGAACTACACAACGGAGAAGAATAACAGGTGTGTAAGAAAAACTAATGGCGGATACTGGAAGATTACAGGGAAAGAGCGTCAGATTAAGACAATGGCGACAGACACTCTCATAGGAACAAAAAAAACACTTGTTTTCTACAACAATCGTCCAGATAGTGTCAAGACAAATTGGGTGATGCACGAATATCATGCACCTAATCATAAGACCATGGTCTTGTGCCGTGTAACAAATAATCCTGAGAAAAAGGAAAAGAAAGCCAAGAGAAAAGCAAACAACCTACTTGAAGAGGAAGTAACACAAACTAAGAAAAAAGCTAGCAACCTAATTGAAGAGGAAGTAACAAGAGGAGAAGATGAACCGGTCAGTGAAATTACTAGCCATCTTACCCAAGAAACAACACCAGAAGATACAAGAATTCAAGATAATGCTGTGGACCAAATTCCCTCATTGGTACCGCAATCTCCGGCGGCCACGGCCACGGCCACATCTCCTGCCTCGTGTTCTGGGAACGAAAACAACAATGCCGGGTCGCTTCCGCTTCAAGCTATCTTGGAGCGAGATGCTTTCTTCAATTCAATGTATTCCAGTGTTGATGTTTGCCCTGGCACCGGGTTCTTGTATTCGGAGTTCTTGAATTCGCTGTTGGCCGGGGATGATCATTGGGCCACCTCTGACTCTCCATAG 894 0.4273 MADNFPVGYRFLPKEEELLTYYLKNKIEGNDSLINNTISQIHLYSFDPWDLPEHSKVKSDDSEWFFFTELNYTTEKNNRCVRKTNGGYWKITGKERQIKTMATDTLIGTKKTLVFYNNRPDSVKTNWVMHEYHAPNHKTMVLCRVTNNPEKKEKKAKRKANNLLEEEVTQTKKKASNLIEEEVTRGEDEPVSEITSHLTQETTPEDTRIQDNAVDQIPSLVPQSPAATATATSPASCSGNENNNAGSLPLQAILERDAFFNSMYSSVDVCPGTGFLYSEFLNSLLAGDDHWATSDSP 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc205g00003 297 Gene3D NAC domain 15 154 IPR036093 GO:0003677|GO:0006355
Stsc205g00003 297 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 170 - -
Stsc205g00003 297 MobiDBLite consensus disorder prediction 149 204 - -
Stsc205g00003 297 Coils Coil 154 181 - -
Stsc205g00003 297 MobiDBLite consensus disorder prediction 149 194 - -
Stsc205g00003 297 ProSiteProfiles NAC domain profile. 5 148 IPR003441 GO:0003677|GO:0006355
Stsc205g00003 297 SUPERFAMILY NAC domain 4 147 IPR036093 GO:0003677|GO:0006355
Stsc205g00003 297 Pfam No apical meristem (NAM) protein 6 133 IPR003441 GO:0003677|GO:0006355
Stsc205g00003 297 MobiDBLite consensus disorder prediction 223 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc205g00003 Stsc-Chr205 41878 46665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc205g00003 3 188 NAC Transcription Factor Family AT3G49530 37.313 4.73e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc205g00003 NAM 6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc205g00003 - - aip:107626709 264.618