Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc205g00001 ATGGAGCTGATGCAAGAATCCACCAACAAAGGCTATTCTCAAGATTTGGAAGAAGAAGAGGAAGACGAGGAAGCACCGGGAGAAGAAACCACCACCACCGCCGTCTCTGCCGCCGTTGGGTTACACCATCATCAAGATGCAACAACAACAAATTACTTCAACCACACAACAAGAATGAATCAACAGCAACAACCACCGCCACCGCAGCAGCAGTTAGTTGATTTCATGGACTTGTCACTTAGGACAAACATCAACCACCATGAAGGCATTAACAATTTCCAAGCCACCGCCACCGCAACCACCGACACTACTCCTAGTAACCACCAGCAGAGTCTACAACCGCAAACTCAACCTCCGCCTCCGCCTCCACCGCCGGAGAAAGAGCACATGTTCGACAAAGTAGTGACGCCGAGCGACGTAGGGAAACTGAACCGGCTGGTGATTCCAAAGCAGCATGCGGAGAAGTACTTCCCGCTGGACTCGACGTCGAACGAGAAGGGACTCCTCCTGAATTTCGAAGACCGGAACGGAAAATTGTGGCGGTTCAGATACTCTTACTGGAACAGCAGCCAGAGCTATGTGATGACGAAAGGTTGGAGTAGATTTGTGAAGGAGAAGAAGCTTGACGCCGGTGACATTGTTTCTTTCCAACGCGGTGTTGGAGAAAATTATAGACATAGATTATACATAGATTGGAGAAGAAGACCTGATCACCATCACCATCACCATCATCTTCATGGAGGAGGACTAGGAGTAGGAGTAGGAGGACATGATTATCCTTCTTCTTCTTCTTCCAATTTCATCACTCCCTTCTTCATTCCTAGTCAAGCTTCTTCACATTACTCTACAATCAGATATGGTGGCAGATTTTACTCTCTGCCACCGCAACAGCAACCGCAATTGGTGATGCCACCACCAACAAGGAATCATCATCATTATCAGAGTTACAACAACAACAACGTTTATCCAATTCATCAGCAACATGGTGGTGGTGGTGGTGGAGGAGGAGGATATGGTGGTTATAATAATAATCATCATCAACATCATAACAATGAGTTGTTTTATCTGAGATCAACAGCAACAGCAGGTTCTCCTTCATCTTCTACTTCAATGTCAATGGTTGATCATCATTATCATTACCAAGGATTATTGGCAAGACAACAACAAGAGCAACAAGATCAAGAAAGGGGTTCTCCAATGATCATTGATTCAGTACCAATTGCTCATCATTTTCATCAACAAGGTGGTGGTGGTGGTAATGGTAATAATCATGGTAGTAACAGTAATAGTAATAATAATAATAATAGTAATAATAATTCTGCAGGAAAAAGGCTAAGGCTATTTGGTGTGAACATGGAATGTGCTTCTTCTTCATCAACACAAGAAGATCAAGAACAAGAACAAGAGCAAGAAGATCCAAAATGCTTCACCTTGTTCTCTTCTAACTCTTCTTCATCTTCTTCTTTTCCACCACCACCACTACTCCAAAATTCAAGGGATGCACAAGAATCTGGTGGAGACCAGAGAAGAATAAGGGAGCAAGCTGCAAATTTTTTTGATCTGGACCCTTCTTTGCAATTTCGCCAACAACACTGA 1596 0.438 MELMQESTNKGYSQDLEEEEEDEEAPGEETTTTAVSAAVGLHHHQDATTTNYFNHTTRMNQQQQPPPPQQQLVDFMDLSLRTNINHHEGINNFQATATATTDTTPSNHQQSLQPQTQPPPPPPPPEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGENYRHRLYIDWRRRPDHHHHHHHLHGGGLGVGVGGHDYPSSSSSNFITPFFIPSQASSHYSTIRYGGRFYSLPPQQQPQLVMPPPTRNHHHYQSYNNNNVYPIHQQHGGGGGGGGGYGGYNNNHHQHHNNELFYLRSTATAGSPSSSTSMSMVDHHYHYQGLLARQQQEQQDQERGSPMIIDSVPIAHHFHQQGGGGGNGNNHGSNSNSNNNNNSNNNSAGKRLRLFGVNMECASSSSTQEDQEQEQEQEDPKCFTLFSSNSSSSSSFPPPPLLQNSRDAQESGGDQRRIREQAANFFDLDPSLQFRQQH 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc205g00001 531 MobiDBLite consensus disorder prediction 454 531 - -
Stsc205g00001 531 FunFam B3 domain-containing protein 124 245 - -
Stsc205g00001 531 Pfam B3 DNA binding domain 131 235 IPR003340 GO:0003677
Stsc205g00001 531 CDD B3_DNA 129 230 IPR003340 GO:0003677
Stsc205g00001 531 MobiDBLite consensus disorder prediction 416 442 - -
Stsc205g00001 531 MobiDBLite consensus disorder prediction 473 502 - -
Stsc205g00001 531 MobiDBLite consensus disorder prediction 410 442 - -
Stsc205g00001 531 SMART B3_2 131 236 IPR003340 GO:0003677
Stsc205g00001 531 ProSiteProfiles B3 DNA-binding domain profile. 131 234 IPR003340 GO:0003677
Stsc205g00001 531 Gene3D - 125 246 IPR015300 -
Stsc205g00001 531 SUPERFAMILY DNA-binding pseudobarrel domain 127 237 IPR015300 -
Stsc205g00001 531 MobiDBLite consensus disorder prediction 100 131 - -
Stsc205g00001 531 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 36 465 IPR044800 GO:0003700
Stsc205g00001 531 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc205g00001 Stsc-Chr205 15183 17465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc205g00001 104 460 RAV Transcription Factor Family AT2G46870 39.779 1.17e-69 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc205g00001 B3 2.2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc205g00001 K09287 - gmx:100778733 357.066