Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2052g00001 ATGGATCGTGGGGACCAAATGGCCTTGTCTGCTTCTGCATCTTATTATATGCAGACAGGACTGCACAACTCCCCCACCATCACCGTGCGTCCTACTCCAATGTCCAATCCTAACCTTCCATTTCAATCAACCATTGGATCTACAATGCCCTTGGACTCTTCGGGGATTTCGTCTCACTGTGTCAATGTTGGTGGAGAACCACTCAAAAGGAAGAGAGGTAGGCCTAGGAAGTATGGTCCAGATGGAACCGTCTCGCTCGCATTGACTCCAACTCCAGCTACTCATCCTGGAACCATCACACAAGCACCCCACAAACGGGGTAGAGGTCGCCCCCCAGGCTCTGGCAAGAAACAGCAGCTGGCTTCTCTTGGTGAATTGATGTCTGGTACGGCTGGGATGGGTTTCACTCCTCACATCATCACCGTTGCTGTTGGAGAAGACATTGCAACCAAAGTTATGGCATTTTCTCAGCAAGGGCCTAGAGCAATTTGTATTATGGCAGCCACTGGTGCTGTCTCTACTGTGACACTTGGACAACCTTCAACTTCTGGTGGCTCTGTCACATACGAGGGCCGTTTTGAGATATTGTGCCTATCAGGCTCTTACTTACTTACTGACAGTGGTGGATCCCGCAATCGATCCGGAGGACTGAGTGTTTCCCTTGCTAGTCCTGACGGCCGTGTTATTGGTGGAGGAGTTGGCGGAGTGCTTATTGCTGCTTCTCCAGTTCAGGTTGTAGTTGGGAGCTTTGTTTGGGGCGGACCAAAGGCGAAGAAACAGAAAAAAGAAGCTTCTTCCGAAGGAGGAGAAGTTGCTATGGAGACGGTGACAATGAACAACATTTCCCCGGTGACACCTTGGCCTACTTCGCGTCCAATGGATATGCGCCATTCGCATATCGACATCGATTTAATGCGTGGGTGA 924 0.5043 MDRGDQMALSASASYYMQTGLHNSPTITVRPTPMSNPNLPFQSTIGSTMPLDSSGISSHCVNVGGEPLKRKRGRPRKYGPDGTVSLALTPTPATHPGTITQAPHKRGRGRPPGSGKKQQLASLGELMSGTAGMGFTPHIITVAVGEDIATKVMAFSQQGPRAICIMAATGAVSTVTLGQPSTSGGSVTYEGRFEILCLSGSYLLTDSGGSRNRSGGLSVSLASPDGRVIGGGVGGVLIAASPVQVVVGSFVWGGPKAKKQKKEASSEGGEVAMETVTMNNISPVTPWPTSRPMDMRHSHIDIDLMRG 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2052g00001 307 MobiDBLite consensus disorder prediction 64 119 - -
Stsc2052g00001 307 SMART AT_hook_2 69 81 IPR017956 GO:0003677
Stsc2052g00001 307 SMART AT_hook_2 105 117 IPR017956 GO:0003677
Stsc2052g00001 307 Pfam Plants and Prokaryotes Conserved (PCC) domain 137 251 IPR005175 -
Stsc2052g00001 307 SUPERFAMILY AF0104/ALDC/Ptd012-like 135 252 - -
Stsc2052g00001 307 ProSiteProfiles PPC domain profile profile. 131 272 IPR005175 -
Stsc2052g00001 307 FunFam AT-hook motif nuclear-localized protein 1-like 137 268 - -
Stsc2052g00001 307 Gene3D - 137 267 - -
Stsc2052g00001 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 40 275 IPR039605 GO:0003680
Stsc2052g00001 307 CDD DUF296 136 250 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2052g00001 Stsc-Chr2052 1606 3789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2052g00001 1 307 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 48.045 5.84e-87 263