Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc204g00009 ATGGTTTCAATGTTCAGGTGCACTACTCTCAACAACGATAACGGGGAAGACATAGACTTGTCAAGGGATGGCAGCCACTACAGTCTCTCCAATGCGGTATTGCCTTCTCTTGGTGCTAGAAGTCACCGCCGAGTCAAGCTTCGCCGTTTCATTGTTTCTCCTTATGACCGTCGTTATAGGATATGGGAGACTTTCCTGGTCATCCTTGTTGTCTACACTGCATGGGTATCTCCATTTGAATTTGGTTTCCTAAAGAAACCAGAAGCACCCCTCTCCTATACAGATAATGTTGTCAATGCACTCTTTGCTGTGGATGTGATTCTCACCTTCTTTGTAGCTTACATTGACAAAACTTCTTATTTACTAATTGATGAGCCAAAACAAATCGCTTGGAGATACACAAGAACTTGGTTTGCATTTGATTTGATCTCTATCATTCCTTCAGAGCTTGTTAGAAAGCTATCACCTGCACCTCTGCAGACTTATGGCCTGTTCAACATGCTCCGTCTATGGCGTCTTCGAAGAGTTAGTGCATTGTTTTCAAGGTTGGAAAAGGACAAAAGCTATAACTATTTTTGGGTTCGATGTGCCAAACTTATCTGTGTTACTCTATTTGCGGTACATTGTGCTGCATGCTTTTACTATCTTATCGCGGCTCGCTATCGTGATCCCAAAAGGACATGGATTGGATCAACAATGGAAAATTTTCTTCAGCAGAGCTTGTGGACAAGATATGTTACATCTGTTTATTGTCCATGGAACAAGCCGAACCCGAAAAGAGACACCATACAAGCTGCCTCAAGTTTCGCTCAAAGGAATCAGTTACCTGTTCGTTTGCAAGATCAGATGCTTGCTCACTTGTGTTTGAAGTTTAGAACAGACTCCGAAGGGTTGCAGCAACAAGAGATACTTGATTCTCTTCCTAAGGCCATCAGATCAAGCATTTCACATTATCTCTTCTATTCTCTGGTGGATAATGTCTACTTGTTTCGAGGCGTTTCAAATGATTTACTCTTTCAATTGGTCTCAGAGATGAAAGCAGAGTATTTTCCTCCTAAAGAAGATGTTATCTTACAGAATGAAGCTCCAACTGATTTCTACGTACTAGTCACTGGTTCTGTGGTTGTTGGAGAGGCAAGTACAGGTGATCTTTGTGGTGAGATTGGTGTGCTTTGCTATAAGCCGCAGCTCTTTACGGTTCGGACAAAGCGATTAAGCCAACTTTTGAGACTAAACCGTACTGCTTTTCTAAATATTGTCCAGGCTAACGTAGGAGATGGAACTATTATTATGAACAATCTTCTTCAGCATTTAAAAGAGATAAATGACCCTATCATGGAGGGAGTTTTGGTGGAGACTGAGAATATGTTGGCTCGTGGTAGGATGGATGTACCAGTTAGTCTTTGTTTTGCAGCAGAAAGAGGAGATGAATTGTTGTTACATCATTTGTTAAAACGAGGTTTGGATACAAATGAATCTGATAGAAATGGAAGAACAGCTTTGGTGGGTAAATGA 1515 0.4125 MVSMFRCTTLNNDNGEDIDLSRDGSHYSLSNAVLPSLGARSHRRVKLRRFIVSPYDRRYRIWETFLVILVVYTAWVSPFEFGFLKKPEAPLSYTDNVVNALFAVDVILTFFVAYIDKTSYLLIDEPKQIAWRYTRTWFAFDLISIIPSELVRKLSPAPLQTYGLFNMLRLWRLRRVSALFSRLEKDKSYNYFWVRCAKLICVTLFAVHCAACFYYLIAARYRDPKRTWIGSTMENFLQQSLWTRYVTSVYCPWNKPNPKRDTIQAASSFAQRNQLPVRLQDQMLAHLCLKFRTDSEGLQQQEILDSLPKAIRSSISHYLFYSLVDNVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYVLVTGSVVVGEASTGDLCGEIGVLCYKPQLFTVRTKRLSQLLRLNRTAFLNIVQANVGDGTIIMNNLLQHLKEINDPIMEGVLVETENMLARGRMDVPVSLCFAAERGDELLLHHLLKRGLDTNESDRNGRTALVGK 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc204g00009 504 SMART cnmp_10 329 435 IPR000595 -
Stsc204g00009 504 SUPERFAMILY cAMP-binding domain-like 258 438 IPR018490 -
Stsc204g00009 504 FunFam Potassium channel KAT3 61 253 - -
Stsc204g00009 504 Pfam Cyclic nucleotide-binding domain 349 422 IPR000595 -
Stsc204g00009 504 PANTHER POTASSIUM CHANNEL AKT1 25 250 IPR045319 GO:0005249|GO:0006813
Stsc204g00009 504 Pfam Ion transport protein 60 243 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc204g00009 504 FunFam Potassium channel KAT2 317 442 - -
Stsc204g00009 504 CDD CAP_ED 329 423 IPR000595 -
Stsc204g00009 504 Gene3D Jelly Rolls 294 442 IPR014710 -
Stsc204g00009 504 SUPERFAMILY Voltage-gated potassium channels 54 251 - -
Stsc204g00009 504 Gene3D - 61 252 - -
Stsc204g00009 504 ProSiteProfiles cAMP/cGMP binding motif profile. 329 420 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc204g00009 Stsc-Chr204 68042 71224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc204g00009 20 501 Ion Channels AT4G32500 61.974 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc204g00009 K21867 - gmx:100781642 816.994