Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc204g00008 ATGAAAGGGGAAGTGCAGCTGCAACCACCGGCGGTTCAGCAGAGCATTAGTGATTCCGAGCCTTTACTCGAAAACCAGGAGGAGGATGTGTCCCCTCTAAGTAACACTGAGATCAAAGATGAGGACTTGGAGGCTGGTTCACTCCCTTGCTGTCGAATTTGCCTTGAAAGCGATTCTGACCCAGAGGATGAATTGATATCTCCATGCATGTGCAAAGGGACCCAACAATTTGTCCATCGTTCATGTCTTGATCACTGGCGCTCAGTGAAGGAAGGATTTGCCTTCTCTCACTGTACTACTTGCAAAGCCCAATTTCATCTTAGGGTTGAATTGTTTGAGGACAATTCTTGGCGTAAAGCAAAGTTTAGGCTCTTTGTGGCAAGAGATGTTTTCCTTGTTTTTCTGGCTGTACAGACCGTGATTGCGGGTATAGGCGGCTTTGCATACATCATGGACAAGGATGGGAACTTCAGGAACTCTTTTGATGATGGTTGGGATAGGATACTGTCAAAACACCCTATACCATTCTATTATTGTATTGGAGTGCTGGCTTTCTTTGTATTGATTGGTTTTTTCGGTCTCATACTACATTGCTCCTCCCTCAACAGCAATGACCCCAGAATGGCTGGTTGTCAGAATTGTTGTTATGGATGGGGCATCCTTGATTGCTTTCCTGCATCAATGGAGGCTTGCTTTGCCCTTGTGGTGGTTTTTGTAGTCATCTTTGCTATTCTCGGCATAGCTTATGGTTTCCTTGCAGCCACCATGGCAATCCAAAGAATTTGGCAAAGGCACTACCATATTCTCACCAAAAGGGAGCTTACAAAGGAATACGTAGTAGAGGATCTACGTGGGACTTATGTCCAACCAAAGTTGGATCCAGATCATGAAGCTCGCTTGAAAATGCTCAAGCTTTTGTAA 921 0.4495 MKGEVQLQPPAVQQSISDSEPLLENQEEDVSPLSNTEIKDEDLEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVELFEDNSWRKAKFRLFVARDVFLVFLAVQTVIAGIGGFAYIMDKDGNFRNSFDDGWDRILSKHPIPFYYCIGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLRGTYVQPKLDPDHEARLKMLKLL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc204g00008 306 SMART ringv_2 50 102 IPR011016 GO:0008270
Stsc204g00008 306 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 14 306 - -
Stsc204g00008 306 MobiDBLite consensus disorder prediction 1 38 - -
Stsc204g00008 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 115 IPR013083 -
Stsc204g00008 306 ProSiteProfiles Zinc finger RING-CH-type profile. 43 108 IPR011016 GO:0008270
Stsc204g00008 306 Pfam RING-variant domain 51 101 IPR011016 GO:0008270
Stsc204g00008 306 SUPERFAMILY RING/U-box 48 106 - -
Stsc204g00008 306 CDD RING_CH-C4HC3_MARCH 51 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc204g00008 Stsc-Chr204 61942 65397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc204g00008 1 306 C3H Transcription Factor Family AT1G11020 79.128 5.91e-171 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc204g00008 - - gmx:100818950 570.081