Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc204g00006 ATGGATAAGAAAAAGGTTGCGGTTCCTCTTGTTTGCCATGGTCACTCTCGCCCAGTGGTTGATCTCTTCTACAGTCCTGTAACTCCCGATGGATTCTTTCTCATCAGTGCAAGCAAGGATTCTAGTCCTATGCTCAGGAATGGAGAGACTGGGGATTGGATTGGAACATTTGAAGGGCACAAAGGTGCAGTGTGGAGTTGCGGCTTGGATACTAATGCATTGCGTGCTGCAACTGCTTCTGCTGATTTCTCAACGAAAGTCTGGGATGCATTAACAGGAGATGAGTTGCATTCTTTTGAGCATAAACACATTGTTCGAGCATGTGCTTTTTCTGAGGATACACACCTTTTGCTCACTGGGGGAGTAGAGAAAATTCTCCGAATTTATGATTTGAACCGACCTGATGCACCACCCAGGGAAGTTGATAAATCTCCTGGTTCAGTCAGAACCGTTGCTTGGCTTCATAGTGACCAGACAATATTGAGTTCTTGTACTGATATGGGTGGTGTCAGGCTATGGGATGTAAGAAGTGGTAAAATAGTTCAGACACTTGAAACCAAGTCATCTGTTACAAGTGCGGAAGTGAGTCAGGATGGCCGTTATATTACAACTGCTGATGGTTCTAGTGTGAAGTTCTGGGATGCTAATTACTATGGATTAGTGAAGAGCTATGACATGCCTTGTAATGTGGAATCTGCATCATTGGAGCCAAAATATGGGAACAAGTTTGCTGCTGGAGGAGAAGACATGTGGGTTCGTGTGTTTGATTTCCATACAGGCAATGAGATTGGAGAATCATATGCCTCAGGATCCGAGGACGGAACCATCAGAATATGGCAGACAGGTCCATTGACTCAGGAAGAATCAGAGGCTTTACCTGCAAATGGATCAATTGAGAAGGTGAAGGTAACTGCAGATGAGGTTTCACGCAAGATTGAGGGATTTCATATCGCAGATGAGGGAAAATCCAAAGAGAAGGAAGAGGCAGGGGAGGAATAA 999 0.4464 MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCGLDTNALRAATASADFSTKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGVEKILRIYDLNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKIVQTLETKSSVTSAEVSQDGRYITTADGSSVKFWDANYYGLVKSYDMPCNVESASLEPKYGNKFAAGGEDMWVRVFDFHTGNEIGESYASGSEDGTIRIWQTGPLTQEESEALPANGSIEKVKVTADEVSRKIEGFHIADEGKSKEKEEAGEE 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc204g00006 332 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Stsc204g00006 332 SMART WD40_4 92 130 IPR001680 GO:0005515
Stsc204g00006 332 SMART WD40_4 177 214 IPR001680 GO:0005515
Stsc204g00006 332 SMART WD40_4 134 174 IPR001680 GO:0005515
Stsc204g00006 332 SMART WD40_4 50 89 IPR001680 GO:0005515
Stsc204g00006 332 SMART WD40_4 236 280 IPR001680 GO:0005515
Stsc204g00006 332 SMART WD40_4 5 47 IPR001680 GO:0005515
Stsc204g00006 332 SUPERFAMILY WD40 repeat-like 4 283 IPR036322 GO:0005515
Stsc204g00006 332 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 7 264 - -
Stsc204g00006 332 Pfam WD domain, G-beta repeat 268 279 IPR001680 GO:0005515
Stsc204g00006 332 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
Stsc204g00006 332 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Stsc204g00006 332 Pfam WD domain, G-beta repeat 179 214 IPR001680 GO:0005515
Stsc204g00006 332 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 132 IPR001680 GO:0005515
Stsc204g00006 332 Gene3D - 9 304 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc204g00006 Stsc-Chr204 51602 54466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc204g00006 9 278 Eukaryotic Initiation Factors Gene Family AT2G46290 25.767 1.78e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc204g00006 K13137 - gmx:100818422 612.838