Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc204g00002 ATGATTCTCCAGTCTTCACAGTCATCAGAGATGATCAGCATGAACAACCAAAACGAAATGGTGGTGGTGGATGAAGGCCTCCTTCCCGATATCATGCTTAACTCTTCCTCCCTCCACCACCTTCCACAAACTACCCACTACAACCACAATTACAATTACAATTATAACCCCTTTGATGATACTACGCTCTCCTGGATAAACGACGACGCCGTTTCTTCGCCCTCTCACCTCACTACCACCGCACTTCCACTACCACCAACACCGCCACCACCACCACCACCACCATCCCTGCTTGATCATCAACAAACGGAGTTGCTGCTGCCACCCGAACAGCAACAGCAAGAGGAAGAAGACTCTGCGATAAGGCTGGTCCACATGCTCATCTCATGCGCCGATTCTCTCCAGCGAGGCCACGTGGAACACGCCGCCTCCCTCATCGACGCCATGCAATCACTCCTAAGACACGTCACCACCGCCTCCGCCATCGGCAAGGTCGCAGCTCACTTCATCGGTGCCTTAACCCGTCGCATCTTTGCTCCTCCCCTCACCGACCGCCACAGCGGAATCGGCGCAGCCGCCAACGACGACGGAGGCCTACTATACCATCATTTCTACGAGGCATGTCCTTACCTCAAGTTCGCTCACTTCACCGCCAACCAGGCCATCCTCGAAGCCTTCAGCGGCCACTCCTCCGTCCACGTCGTCGACTTCCACCTCGCGCATGGACTCCAGTGGCCACCGCTCATCCAGGCACTCGCACTTCGCCCCGGCGGTCCCCCCTCCCTCCGCATCACCGGCATTGGACCTCCCTCTCCGGACCGCCGCGACGCCCTCCGCGAAACCGGCATCCGGCTCGCCGAACTCGCCCGATCCGTCAACGTCCGGTTCGCTTTCCGCGGAGTCGCTGCGGCAAGGCTGGAAGACGTGGAGCCATGGATGCTACAGGTGCGGCAGGATGAGGCGGTGGCGATTAACTCTGTCATGCAGCTTCACCGGCTCCTAGGATCCGATGCGGGAATTGAAGGTGTTCTCGGTTGGATCCGGAGGTTAAACCCTAAGATCGTAACAGTGGTTGAACAAGAAGCGAATCATAACCAGACCGGGTTCTTGGAACGGTTCACAGAGGCACTGCATTACTACTCAGCGGTTTTCGATTCGCTAGAGGCTTGTCCAAGCGAACCGGATAAGTCGCTGGCGGAAATGTACCTGGAGAGAGAAATTAGCAACGTGGTTTGTTGTGAAGGATCGGCTCGGGTGGAGAGGCATGAGCCGCTGGGCCAATGGAAGGCCCGGTTGGAGAAATCGGGGTTTAAATGTGTGGGCCTGGGGTCAAATGCTTTGAGGCAGGCTAGCATGTTATTGAGTTTGTTCTCTGCTGAGGGGTACTGCGTGGAAGAGAAAGATGGATGTTTGACTTTGGGTTGGCATGGTAGACCCCTCATTGCTGCTTCCGCTTGGCAACCCCTCTCTCCTCACCCTCACCTGCATTGGCTTCCTTAG 1500 0.5653 MILQSSQSSEMISMNNQNEMVVVDEGLLPDIMLNSSSLHHLPQTTHYNHNYNYNYNPFDDTTLSWINDDAVSSPSHLTTTALPLPPTPPPPPPPPSLLDHQQTELLLPPEQQQQEEEDSAIRLVHMLISCADSLQRGHVEHAASLIDAMQSLLRHVTTASAIGKVAAHFIGALTRRIFAPPLTDRHSGIGAAANDDGGLLYHHFYEACPYLKFAHFTANQAILEAFSGHSSVHVVDFHLAHGLQWPPLIQALALRPGGPPSLRITGIGPPSPDRRDALRETGIRLAELARSVNVRFAFRGVAAARLEDVEPWMLQVRQDEAVAINSVMQLHRLLGSDAGIEGVLGWIRRLNPKIVTVVEQEANHNQTGFLERFTEALHYYSAVFDSLEACPSEPDKSLAEMYLEREISNVVCCEGSARVERHEPLGQWKARLEKSGFKCVGLGSNALRQASMLLSLFSAEGYCVEEKDGCLTLGWHGRPLIAASAWQPLSPHPHLHWLP 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc204g00002 499 Pfam GRAS domain family 123 487 IPR005202 -
Stsc204g00002 499 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 108 483 IPR005202 -
Stsc204g00002 499 MobiDBLite consensus disorder prediction 75 100 - -
Stsc204g00002 499 MobiDBLite consensus disorder prediction 81 98 - -
Stsc204g00002 499 ProSiteProfiles GRAS family profile. 114 487 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc204g00002 Stsc-Chr204 24045 25544 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc204g00002 115 487 GRAS Transcription Factor Family AT1G14920 53.457 1.76e-137 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc204g00002 GRAS 5.7e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc204g00002 K14494 - jre:109006296 552.362