Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc204g00001 ATGAAGGATCCAAAGGAGGATCAAGAGAAATCTAGGAGGGTTGTGCAGAAATCCATGGAGCTTAGAAGAAGGGGCAGCAGCAGAAGGAGAAACCAATGCAGCAAAGGAGTTGATTCACAACTTGTGTCCTCCTCTACTTGTTCCAAGAATCTTGTGTTTGCTGCAAGGCCTGGCTATGGCCACCTTGGAACAAAGTGTGTCGTCAAAGCTAACCACTTCCTTGCAGATATTTCAGCATGTGACCTCAGCCATTACACTGTTAAGATAATACCTGAAGTGAGATGTCGCAAAACAAGCAAAGCTATCATAGCTGAGTTGGTGAGGGTTCACAAGAACACTGAGTTGGGTATGAGGCTTCCTGTGTATGATGGAGGAAGAAATCTTTACACTGCTGCCATGCTTCCTTTCACATACAAAGAGTTCACCATACTCTTGACAGAAGATGATGACAGTAATGGTGCTGCTAGGGAAAGAGAGTTTAAGGTGGTAATCAAGTTTGCTGCTCGTGTTAGCATGCATCAATTACGTGAGCTTCTCAGTGGGAAGCAAGTGGACACACCACAAGAAGCACTTACTGTTATTGACATTGTTCTGAGGGAGCTTGCTGCACAGAGTTACGTGTCCATTGGGAGGTTTCTGTATTCTCCTGATTTTAGAAAACCACAGCAGCTTAGTGGTGGCTTAGAATCATGGCGTGGATTCTACCAAAGTATAAGGCCTACCCAGATGGGTTTATCACTCAATATTGACATGTCATCAATGGCGTTTATTGAGCCACTCCCTGTGATTGACTTTGTTGCTCAAATTTTGGGAAAAGATGTGCACTCAAAACCTTTGTCAGATGCAGATCGTGTCAAGATTAAGAAAGCCTTAAGAGGTGTAAAAGTTGAAGTTACACACAGAGGGAGTTTTAGAAGGAAGTATAGGATATCAGGATTGACATCACAGCCAACAAGGGAGCTTAACTTCCCTCTTGATGAGAAAATGAACATGAAATCAGTGGCATGCAAGATAGTTGGAGGGCAGAGGTATACAAAAGGGCTGAATGAAAAGCAGATAACTTCTCTCTTGAAGGTCTCATGCCAGAGACCACGTGAACAAGAGACAGATATTCTTCAGACAATTCAAGAAAATGATTATGAATATAATCCGTATGCGAAAGAGTTTGGTATCAGTGTAGACAGCAAGCTTACATCTGTTGATGCTCGGGTTCTTCCTGCTCCATGGTTGAAATATCATGACACTGGAAGAGAGAAAGAATACTTGCCGCAAGTTGGTCAGTGGAATATGATGAACAAGAAAGTAATAAATGGAAGCACTGTAAGATATTGGGCATGTATCAATTTCTCAAGAAGTGTCCAAGAAAGCACAGCTCGTGGATTTTGCCAACAGTTAGTTCAGATGTGCCAAATCTCAGGCATGGAATTTAGCCAGGATCCTGTGATTCCTGTGTATTCAGCAAAACCTGATCTGGTTAAGAAGGCTTTGAAGTATGTACATTCTGCTTCTCTAGACAAACTTGGTGGCAAGGAGCTTGAATTGCTTATTGCAATTCTTCCAGACAACAATGGCTCTCTATATGGTGATCTCAAAAGAATATGTGAAACCGATCTCGGGTTGATTTCTCAGTGTTGTCTTACAAAGCACGTATTCAAGATTAATAGACAGTATTTGGCAAATGTTGCACTCAAAATCAATGTCAAGATGGGAGGAAGGAACACTGTGCTTTTGGATGCTTTAAGTTGGAGAATTCCACTGGTTAGTGACATTCCAACAATAATTTTTGGAGCTGATGTAACCCATCCAGAATCCGGAGAGGACTCTTGTCCTTCCATTGCTGCTGTTGTAGCCTCACAGGACTGGCCAGAAGTAACAAAGTATGCAGGATTGGTTTGCGCGCAGCCTCATCGCGAAGAACTCATACAAGATCTTTTCAAATGCTGGAAAGATCCTCATCATGGTGTAGTTTATGGTGGCATGATCAGAGAGCTCTTACTCTCATTTAAGAAGGCAACTGGACAAAAACCATTGAGGATAATATTTTACAGAGATGGGGTAAGTGAAGGACAATTCTACCAAGTTTTGCTGTATGAGCTTGATGCCATCCGAAAGGCTTGTGCATCGTTGGAACCTAGTTATCAACCTCCAGTAACATTTGTTGTGGTTCAAAAACGCCATCACACTAGACTCTTCTCAAGCAATCATGATGATAGAAATAGCACTGATAAGAGTGGCAATATCTTACCTGGTACTGTGGTGGATTCTAAGATCTGTCATCCTACAGAATTTGACTTCTATTTATGCAGTCATGCAGGAATTCAGGGTACAAGTAGACCAGCTCACTACCATGTCTTATGGGATGAGAACAATTTCACTGCTGATGAAATTCAGTCGCTCACCAACAACTTATGCTACACTTATGCAAGGTGTACAAGATCTGTTTCAGTAGTGCCTCCTGCATACTATGCTCATTTGGCAGCATACCGAGCTCGATTCTACATGGAACCTGGGGTTACAGAGATTTCTAAAGCGCGCGGTGCAAGATCAAAAGATGGTTCAGTTCGTCCACTCCCAGCTCTCAAAGAAAAAGTGAAGAATGTCATGTTCTACTGCTGA 2616 0.4232 MKDPKEDQEKSRRVVQKSMELRRRGSSRRRNQCSKGVDSQLVSSSTCSKNLVFAARPGYGHLGTKCVVKANHFLADISACDLSHYTVKIIPEVRCRKTSKAIIAELVRVHKNTELGMRLPVYDGGRNLYTAAMLPFTYKEFTILLTEDDDSNGAAREREFKVVIKFAARVSMHQLRELLSGKQVDTPQEALTVIDIVLRELAAQSYVSIGRFLYSPDFRKPQQLSGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVHSKPLSDADRVKIKKALRGVKVEVTHRGSFRRKYRISGLTSQPTRELNFPLDEKMNMKSVACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQTIQENDYEYNPYAKEFGISVDSKLTSVDARVLPAPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESTARGFCQQLVQMCQISGMEFSQDPVIPVYSAKPDLVKKALKYVHSASLDKLGGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPHHGVVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSSNHDDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPGVTEISKARGARSKDGSVRPLPALKEKVKNVMFYC 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc204g00001 871 MobiDBLite consensus disorder prediction 1 37 - -
Stsc204g00001 871 SUPERFAMILY Ribonuclease H-like 504 835 IPR012337 -
Stsc204g00001 871 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 336 835 - -
Stsc204g00001 871 Pfam Argonaute linker 2 domain 368 412 IPR032472 -
Stsc204g00001 871 CDD PAZ_argonaute_like 259 335 - -
Stsc204g00001 871 SMART DUF1785_2 207 259 IPR014811 -
Stsc204g00001 871 ProSiteProfiles Piwi domain profile. 514 835 IPR003165 GO:0003676
Stsc204g00001 871 MobiDBLite consensus disorder prediction 1 27 - -
Stsc204g00001 871 SMART Piwi_a_2 514 835 IPR003165 GO:0003676
Stsc204g00001 871 Pfam N-terminal domain of argonaute 64 198 IPR032474 -
Stsc204g00001 871 Gene3D - 583 871 IPR036397 GO:0003676
Stsc204g00001 871 Gene3D paz domain 254 343 - -
Stsc204g00001 871 FunFam Argonaute 10 404 577 - -
Stsc204g00001 871 Pfam Piwi domain 515 834 IPR003165 GO:0003676
Stsc204g00001 871 Gene3D - 404 577 - -
Stsc204g00001 871 FunFam protein argonaute 10-like 583 871 - -
Stsc204g00001 871 Pfam Mid domain of argonaute 423 500 IPR032473 -
Stsc204g00001 871 CDD Piwi_ago-like 384 834 IPR045246 -
Stsc204g00001 871 SUPERFAMILY PAZ domain 68 329 IPR036085 GO:0005515
Stsc204g00001 871 Pfam Argonaute linker 1 domain 208 257 IPR014811 -
Stsc204g00001 871 ProSiteProfiles PAZ domain profile. 260 335 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc204g00001 Stsc-Chr204 17832 22782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc204g00001 49 871 Eukaryotic Initiation Factors Gene Family AT5G43810 71.445 0.0 1313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc204g00001 K11593 - gmx:100798086 1562.36