Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2048g00002 ATGTTTGTTCAACTTGCAATCACGTTCTTAGTGATAGCACTCTTCATGTACCTCCGCCCTACTCCGACGGCGAAATCCAAGGCCCTCCGCCACCTCCCAAACCCTCCGAGCCCAAAGCCCCGCCTCCCTTTAGTGGGACACCTCCACCTCTTGGACAACCCTCTCCTCCACCACTCTCTCATCCGTCTCGCCAAGCAACATGGCCCCATCTTTTCCCTCTACTTCGGCTCCATGCCCACCGTGGTCGCTTCCACCCCTGAACTATTCAAGCTCTTCCTCCAAACCCACGAGGCCACCTCCTTCAACACCAGGTTCCAAACCTCTGCCATCCGCCGCCTCACCTACGACAACTCTGTCGCTATGGTCCCCTTTGGACCTTACTGGAAGTTCATAAGGAAGCTGATCATGAACGACCTCCTGAACGCCACCACCGTTGCCAAGCTGAGACCTCTGAGGAGCGAAGAGATCAAGAAAGTGCTCAAGGTTCTTGCAGAGAACGCGGAGGCTCAAACACCCGTCGACGTCACCGAGGAGCTTCTGAAATGGACCAACAGCACCATATCCAGGATGATGCTTGGGGAGGCAGAGGAGATCAGACATATTGCCCGCGAACTTCTCAAGATCTTCGGCGAGTACAGCCTCTCTGACTTCATCTGGCCCTTGAAAAAGCTCAAAGTTGGCCAGTACGAGAAGAGGATCGACAACATCTTGGGCATGTATGACCCTGTTGTTGAGAAAGTCATCAAGAAACGCCAGGAGGTCAGGAGGAGGAGGAAGGAGAATAACGGCCAGCTCCAGGAAGGCGAACAGGCCGTCGTCTTCCTCGACACCTTGCTTGATTTTGCGGAGGATGAAACCATGGAGATCAAGATCACCAAGGACCAGATCAAGGGTCTCATAGTAGATTTCTTCTCAGCAGGAACAGATTCGACGGCGGTTGCAACAGACTGGGCGTTGGCAGAGCTGATAAACAACCCAAGGGTTCTTGAAAAGGCACGCGAAGAAGTGTACAGCGTGGTTGGGAAAGAGAGGCTTGTGGATGAAACAGACATCCAGAACCTTCCATACATCAGAGCCATCGTGAAGGAGACGTTCCGCATGCACCCGCCACTCCCCGTCGTCAAGAGGAAGTGCGTGGCGGAGTGCGAGGTGGACGGTTACGTCATCCCAGAGGGAGCACTCATACTCTTCAACGTCTGGGCCGTCCAAAGAGACCCTAAGTACTGGGAAAGCCCACTGGAGTTCAAGCCCGAGAGGTTCCTCGAGAACTCCGCCGATGGAGGAGAGGCCGGGTCCGTTGACCTCAGGGGTCAACACTTCACGCTGTTGCCGTTTGGGTCAGGGAGGAGGATGTGCCCTGGTGTCAACTTGGCCACTGCTGGAATGGCAACGCTGCTTGCTTCCCTCATTCAGAACTTTGACATGCAGGTTGTAGGCTCAGATGGAAAGCCCTTGAAGGGTAAGGATAACAGGGCCAGCGTCGAAGAGAGGCCCGGGCTTACTGTCCCTAGGGCCCATCCCCTTGTCTGTGTTCCGGTTGCCAGGTCCGATGCAGCGGCAAAGCTCCTTTCCTCATAA 1578 0.5494 MFVQLAITFLVIALFMYLRPTPTAKSKALRHLPNPPSPKPRLPLVGHLHLLDNPLLHHSLIRLAKQHGPIFSLYFGSMPTVVASTPELFKLFLQTHEATSFNTRFQTSAIRRLTYDNSVAMVPFGPYWKFIRKLIMNDLLNATTVAKLRPLRSEEIKKVLKVLAENAEAQTPVDVTEELLKWTNSTISRMMLGEAEEIRHIARELLKIFGEYSLSDFIWPLKKLKVGQYEKRIDNILGMYDPVVEKVIKKRQEVRRRRKENNGQLQEGEQAVVFLDTLLDFAEDETMEIKITKDQIKGLIVDFFSAGTDSTAVATDWALAELINNPRVLEKAREEVYSVVGKERLVDETDIQNLPYIRAIVKETFRMHPPLPVVKRKCVAECEVDGYVIPEGALILFNVWAVQRDPKYWESPLEFKPERFLENSADGGEAGSVDLRGQHFTLLPFGSGRRMCPGVNLATAGMATLLASLIQNFDMQVVGSDGKPLKGKDNRASVEERPGLTVPRAHPLVCVPVARSDAAAKLLSS 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2048g00002 525 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 445 454 IPR017972 GO:0005506|GO:0016705
Stsc2048g00002 525 SUPERFAMILY Cytochrome P450 30 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2048g00002 525 PRINTS E-class P450 group I signature 398 422 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2048g00002 525 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2048g00002 525 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2048g00002 525 PRINTS E-class P450 group I signature 452 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2048g00002 525 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2048g00002 525 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2048g00002 525 PRINTS E-class P450 group I signature 442 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2048g00002 525 Gene3D Cytochrome P450 24 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2048g00002 525 PRINTS P450 superfamily signature 443 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2048g00002 525 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2048g00002 525 PRINTS P450 superfamily signature 452 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2048g00002 525 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2048g00002 525 PANTHER STEROID 21-HYDROXYLASE-RELATED 11 509 - -
Stsc2048g00002 525 Pfam Cytochrome P450 36 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2048g00002 Stsc-Chr2048 6003 8300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2048g00002 1 515 Cytochrome P450 AT5G06900 35.551 3.71e-110 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2048g00002 - K23179 ag:BAA76380 844.343