Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc203g00012 ATGAGTTTCAGAGAAGAATCAGTTCTGGGGAGCACTGACTCAAAACCAGTGAAGCAAAATGGGTTCATAACAGACACTCAGTTAACAATTGATGAGAGCCTTTTGGTTGATCCAAAACTTCTGTTCATAGGGTCCAAGATTGGTGAGGGAGCTCATGGTAAAGTCTATGAAGGAAGGTATAGAGATAGAATTGTTGCAATCAAAGTTCTAAATCGTGGGAGCACTTCTGAAGAAAGAGCTGCCCTTGAAAATCGTTTCGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTTGTTAAGTTTATCGGAGCTTGTAAGGATCCTCTGATGGTGATTGTTACAGAGTTATTGCCTGGGATGTCACTGCGGAAATATTTAACAAGTATCCGTCCGAAGTTACTAGACCTTAATGTGGCTATAAACTTTGCCCTTGATATTGCTCGGGCCATGGATTGGTTACATGCCAACGGGATCATACATAGAGATCTAAAACCTGACAATCTGTTGCTTACGGCAAATCAGAAGTCTGTTAAACTTGCAGATTTTGGTCTCGCTAGAGAAGAATCTGTGACTGAAATGATGACGGCAGAAACCGGAACTTACCGATGGATGGCACCAGAGTTGTATAGTACTGTGACATTGCGTCAGGGAGAGAAAAAGCACTACAACAATAAGGTAGATGTGTATAGCTTCGGTATTGTTTTGTGGGAGCTGCTAACAAACCGCATGCCTTTCGAAGGGATGTCGAATTTACAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCTAGCATGCCTGAAGATATATCCCCGGATCTTGCCTTTATCATACAATCTTGCTGGGTCGAAGATCCTAACTTGAGGCCAAGTTTTAGTCAGATCATTCGCATGCTCAATGCATTCCTCTTCACGCTTTCGCCGCCGTCTCCTCCCTTGCAAGAGCCCGATGAAACTGAGCCTGAGGCAGCGACAACAAGTAATGGTACCATTACTCAGTATTCCGCCCGGAATAGAGGAAAGTTCGGTTTTATTCGCCATTTGTTTTCTTCAAAGAGGACCAAAAACTAA 1080 0.4361 MSFREESVLGSTDSKPVKQNGFITDTQLTIDESLLVDPKLLFIGSKIGEGAHGKVYEGRYRDRIVAIKVLNRGSTSEERAALENRFAREVNMMSRVHHENLVKFIGACKDPLMVIVTELLPGMSLRKYLTSIRPKLLDLNVAINFALDIARAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSMPEDISPDLAFIIQSCWVEDPNLRPSFSQIIRMLNAFLFTLSPPSPPLQEPDETEPEAATTSNGTITQYSARNRGKFGFIRHLFSSKRTKN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc203g00012 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Stsc203g00012 359 FunFam serine/threonine-protein kinase HT1 122 320 - -
Stsc203g00012 359 Gene3D Transferase(Phosphotransferase) domain 1 123 337 - -
Stsc203g00012 359 SMART serkin_6 41 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc203g00012 359 SUPERFAMILY Protein kinase-like (PK-like) 39 321 IPR011009 -
Stsc203g00012 359 ProSiteProfiles Protein kinase domain profile. 41 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc203g00012 359 PRINTS Tyrosine kinase catalytic domain signature 273 295 IPR001245 GO:0004672|GO:0006468
Stsc203g00012 359 PRINTS Tyrosine kinase catalytic domain signature 155 173 IPR001245 GO:0004672|GO:0006468
Stsc203g00012 359 PRINTS Tyrosine kinase catalytic domain signature 229 251 IPR001245 GO:0004672|GO:0006468
Stsc203g00012 359 PRINTS Tyrosine kinase catalytic domain signature 117 130 IPR001245 GO:0004672|GO:0006468
Stsc203g00012 359 CDD STKc_MAP3K-like 47 302 - -
Stsc203g00012 359 Gene3D Phosphorylase Kinase; domain 1 29 120 - -
Stsc203g00012 359 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 41 304 - -
Stsc203g00012 359 FunFam Kinase suppressor of Ras 1 30 120 - -
Stsc203g00012 359 ProSitePatterns Protein kinases ATP-binding region signature. 47 68 IPR017441 GO:0005524
Stsc203g00012 359 Pfam Protein tyrosine and serine/threonine kinase 43 302 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc203g00012 Stsc-Chr203 43119 47284 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc203g00012 29 359 MAP Kinase Kinase Kinase AT5G01850 74.085 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Stsc203g00012 PK_Tyr_Ser-Thr 5.2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc203g00012 - - qsa:O6P43_016485 599.742