Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc203g00011 ATGAGTTTCAGAGAAGAATCAGTTCTGGGGAGCACTGACTCAAAACCAGTGAAGCAAAATGGGTTCATAACAGACACTCAGTTAACAATTGATGAGAGCCTTTTGGTTGATCCAAAACTTCTGTTCATAGGGTCCAAGATTGGTGAGGGAGCTCATGGTAAAGTCTATGAAGGAAGGTATAGAGATAGAATTGTTGCAATCAAAGTTCTAAATCGTGGGAGCACTTCTGAAGAAAGAGCTGCCCTTGAAAATCGTTTCGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTTGTTAAGTTTATCGGAGCTTGTAAGGATCCTCTGATGGTGATTGTTACAGAGTTATTGCCTGGGATGTCACTGCGGAAATATTTAACAAGTATCCGTCCGAAGTTACTAGACCTTAATGTGGCTATAAACTTTGCCCTTGATATTGCTCGGGCCATGGATTGGTTACATGCCAACGGGATCATACATAGAGATCTAAAACCTGACAATCTGTTGCTTACGGCAAATCAGAAGTCTGTTAAACTTGCAGATTTTGGTCTCGCTAGAGAAGAATCTGTGACTGAAATGATGACGGCAGAAACCGGAACTTACCGATGGATGGCACCAGAGTTGTATAGTACTGTGACATTGCGTCAGGGAGAGAAAAAGCACTACAACAATAAGGTAGATGTGTATAGCTTCGGTATTGTTTTGTGGGAGCTGCTAACAAACCGCATGCCTTTCGAAGGGATGTCGAATTTACAGGCTGCTTATGCTGCTGCATTTAAGGTTGCAGCAAGAGAGGCCTAG 810 0.4284 MSFREESVLGSTDSKPVKQNGFITDTQLTIDESLLVDPKLLFIGSKIGEGAHGKVYEGRYRDRIVAIKVLNRGSTSEERAALENRFAREVNMMSRVHHENLVKFIGACKDPLMVIVTELLPGMSLRKYLTSIRPKLLDLNVAINFALDIARAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKVAAREA 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc203g00011 269 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Stsc203g00011 269 PIRSF ILK 12 265 - -
Stsc203g00011 269 ProSiteProfiles Protein kinase domain profile. 41 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc203g00011 269 FunFam Kinase suppressor of Ras 1 30 120 - -
Stsc203g00011 269 SUPERFAMILY Protein kinase-like (PK-like) 29 258 IPR011009 -
Stsc203g00011 269 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 41 261 - -
Stsc203g00011 269 SMART serkin_6 41 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc203g00011 269 Pfam Protein kinase domain 45 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc203g00011 269 CDD STKc_MAP3K-like 47 255 - -
Stsc203g00011 269 Gene3D Transferase(Phosphotransferase) domain 1 122 269 - -
Stsc203g00011 269 Gene3D Phosphorylase Kinase; domain 1 29 120 - -
Stsc203g00011 269 ProSitePatterns Protein kinases ATP-binding region signature. 47 68 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc203g00011 Stsc-Chr203 43119 47284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc203g00011 29 263 MAP Kinase Kinase Kinase AT5G01850 79.923 1.79e-149 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Stsc203g00011 Pkinase 3.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc203g00011 - - pvu:PHAVU_008G083700g 468.774