Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc203g00008 ATGCAATTGCATCGGCGTGCTCTTGAAACAGACTTAACAACCATTCGACCATCTCCTTCTTCATCATCACCATCTTCTTCTTCGATCCTCTATGAAACGAACTTCGACGCAAACATAGTGATAATCCTGGCGGCGTTATTGTGTGCACTGGTGGGGGCCTTGGGTCTGAACTCCATAGCACGGTGTGCGCTCAGGTGCGGGCGGAGGATGACGGAGGAGCAAGAGGCGGCGAGGCTAGCGACGACGGGGTTGAAGAAGAGTCACCTGAGGAGGATTCCGGTGGCGGTGTACGGTTCCGGAGAGAATATTCCGGGGACGGAGTGCCCGATATGTTTGGGTGAGTTCGAGAAAGGGGATAAGGTTAGAATGCTTCCTGAATGCAAGCATGGGTTTGACGTGAGGTGTATTGACACGTGGCTCGTTTCGCATTCTTCCTGCCCCAATTGCCGGCACTCCTTGCTTCAGAAGAAGCCTAAGCTTGATAATGGTGCTTCTTCTTCTTCAGGTGGTGGTGGTGATGGAGGCAAAGAAGACGGAAGAAACGTGGTGGTTGTCCAAGACCGGACAAGTTAA 573 0.5236 MQLHRRALETDLTTIRPSPSSSSPSSSSILYETNFDANIVIILAALLCALVGALGLNSIARCALRCGRRMTEEQEAARLATTGLKKSHLRRIPVAVYGSGENIPGTECPICLGEFEKGDKVRMLPECKHGFDVRCIDTWLVSHSSCPNCRHSLLQKKPKLDNGASSSSGGGGDGGKEDGRNVVVVQDRTS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc203g00008 190 SMART ring_2 108 149 IPR001841 -
Stsc203g00008 190 MobiDBLite consensus disorder prediction 157 190 - -
Stsc203g00008 190 CDD RING-H2_EL5-like 107 150 - -
Stsc203g00008 190 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Stsc203g00008 190 PANTHER RING-H2 FINGER PROTEIN ATL78 11 167 IPR044602 GO:0016567|GO:0016740
Stsc203g00008 190 SUPERFAMILY RING/U-box 91 160 - -
Stsc203g00008 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 155 IPR013083 -
Stsc203g00008 190 Pfam Ring finger domain 107 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc203g00008 Stsc-Chr203 28845 29417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc203g00008 18 158 C3H Transcription Factor Family AT3G10910 54.248 4.31e-52 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc203g00008 - K19040 adu:107485262 242.276