Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc202g00003 ATGAAGTGGGAAGTGGAAGTACTGTCTCCTTCTTCACCTTATCTTCATCATAACAACAACACAACTCATTGGTTTCTTGGAGATAACAACATCAATAGCAACAATAAGAGCAGCACAAAATGGACCCATGAAGAGAACAAATTGTTTGAGAATGCTCTTGCTTTGCATGATAAAGAGACACCAGATAGGTGGCATAGGGTAGCTGAGATGATTCCAGGGAAAACTGTTGTTGATGTGATGAAGCAGTACCATGAATTGTTAGCAGATGTTAATGATATTGAGAATGGATTGGTACCAATTCCTGGTTACAGTACTAGCACAACAACAACAACTACTACTTCACCTTTTACATTGGATTGGGTCAACAATAGTTGTTATGATGGGTTCAAAGGAATTGGTGCTGCTGCTGCAAAGAGATCTTCTTCAAGAACACCAGAACAAGAGAGGAAGAAAGGTGTGCCTTGGACTGAAGAAGAGCATAAGTTGTTCTTACTTGGTCTAAAGAAGTATGGCAAAGGCGATTGGAGGAACATTTCGCGCAACTTCGTGATCACCCGAACACCGACCCAAGTGGCGAGCCATGCTCAGAAGTACTTCATCCGGCAACTCTCCGGCGGCAAAGACAAGAGGAGGGCAAGCATCCATGATATAACAACAGTTAACCTCACAGACAACAACAACAGAACACTTGCTAATACTTCCTCAGAAGATAGCAGCAAGAGATCCACTTCACCACAAAACCATAATAATAATAATAATTCCATGGTGTTCTCAAATTCAAATGCTATAGGGAAATTCCAATGGAATAATGATGATACTAAGTCAAATTCAAGAGGAGGAGGATCTACTATGACATTCAATAACAATGATGATGAAGCATTATTTGTGTCTCATCATCATCATTATGGTAGTGTTAATAACTCCTCTTATGGTTTTAAGATGCAGCAGGGTCAGAATATGCATAAAAGTGCTCTTCTTAATGAGTCTTCTTACTTAGGACTTCACACACAAAACATTGCTTTTCATATGTAG 1032 0.3963 MKWEVEVLSPSSPYLHHNNNTTHWFLGDNNINSNNKSSTKWTHEENKLFENALALHDKETPDRWHRVAEMIPGKTVVDVMKQYHELLADVNDIENGLVPIPGYSTSTTTTTTTSPFTLDWVNNSCYDGFKGIGAAAAKRSSSRTPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTDNNNRTLANTSSEDSSKRSTSPQNHNNNNNSMVFSNSNAIGKFQWNNDDTKSNSRGGGSTMTFNNNDDEALFVSHHHHYGSVNNSSYGFKMQQGQNMHKSALLNESSYLGLHTQNIAFHM 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc202g00003 343 Gene3D - 31 100 - -
Stsc202g00003 343 ProSiteProfiles SANT domain profile. 155 203 IPR017884 -
Stsc202g00003 343 FunFam Transcription factor SRM1 33 100 - -
Stsc202g00003 343 NCBIfam myb-like DNA-binding domain, SHAQKYF class 150 202 IPR006447 GO:0003677
Stsc202g00003 343 MobiDBLite consensus disorder prediction 225 258 - -
Stsc202g00003 343 CDD SANT 154 199 IPR001005 -
Stsc202g00003 343 Gene3D - 153 203 - -
Stsc202g00003 343 SUPERFAMILY Homeodomain-like 39 95 IPR009057 -
Stsc202g00003 343 SUPERFAMILY Homeodomain-like 148 202 IPR009057 -
Stsc202g00003 343 MobiDBLite consensus disorder prediction 136 155 - -
Stsc202g00003 343 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Stsc202g00003 343 Pfam Myb-like DNA-binding domain 154 199 IPR001005 -
Stsc202g00003 343 ProSiteProfiles Myb-like domain profile. 33 87 IPR001005 -
Stsc202g00003 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 147 203 IPR017930 -
Stsc202g00003 343 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 34 282 IPR043363 -
Stsc202g00003 343 SMART sant 37 89 IPR001005 -
Stsc202g00003 343 SMART sant 151 201 IPR001005 -
Stsc202g00003 343 ProSiteProfiles Myb-like domain profile. 147 199 IPR001005 -
Stsc202g00003 343 FunFam transcription factor MYB1R1 153 204 - -
Stsc202g00003 343 CDD SANT 40 87 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc202g00003 Stsc-Chr202 17545 19484 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc202g00003 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc202g00003 - - cam:101514273 389.808