Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc201g00008 ATGGATTCTCATCAACTAACGGCGCTTGTTGTTGGTGATGATAGGATGCTCAGAATAATCCATGGAAAGATGTTGAACAGTGTTGGGGTCAAAAATCAAGTTGTGCAAAATGGTAAAGAAGCCATTCATCTTCACCTCTCTGCTCAAACTTTTGACCTAATTCTCATTGACATGGATATGCCTATCATGAATGGCATTCAGGCAATAAAGGAACTTCGATCATTGGGAATTTGTAGCATTATTGTTGGTGTTTCAGCAAGGTGTATGGAATCACATATTCAAGAATTTATGGAAGCAAGATTAGATGATTACTTTGAGAAGCCTCTAAATATTGCTAAGCTTACTTCATTCATTCACAAAATCTAA 366 0.3661 MDSHQLTALVVGDDRMLRIIHGKMLNSVGVKNQVVQNGKEAIHLHLSAQTFDLILIDMDMPIMNGIQAIKELRSLGICSIIVGVSARCMESHIQEFMEARLDDYFEKPLNIAKLTSFIHKI 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc201g00008 121 Gene3D - 1 121 - -
Stsc201g00008 121 Pfam Response regulator receiver domain 9 117 IPR001789 GO:0000160
Stsc201g00008 121 CDD REC_hyHK_CKI1_RcsC-like 9 114 - -
Stsc201g00008 121 ProSiteProfiles Response regulatory domain profile. 7 121 IPR001789 GO:0000160
Stsc201g00008 121 SMART REC_2 6 118 IPR001789 GO:0000160
Stsc201g00008 121 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 121 - -
Stsc201g00008 121 SUPERFAMILY CheY-like 5 120 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc201g00008 Stsc-Chr201 43547 43999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc201g00008 6 118 Response Regulator Gene Family AT3G04280 38.261 2.29e-21 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc201g00008 Response_reg 4.1e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc201g00008 - - gmx:100794931 150.214