Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc201g00007 ATGAAGAATAATAATAACCACCGTGTACCGGACTTGGAAATGGAAATGGAGGAGCAAGAGTACCCTACCCGCCAAAAGAAAGCATCCTCAATGTCCTACAACAGGGCAGAAGACGACGTAATGGAGCTCTTGTGGCAAAACGGACAGGTGGTTATGCACACTCAGAACCACCGACCTACTCCTACAACAAATCACCACCTCTTCATGCAAGAAGATGAGATGATTTCTTTGCTCAACCCTCCATTAATCACCAATTCTCCATTGGATCACACCTTATCTTCGGATTTCCTCTACGACAACCACACCGCCATCAATACTACGCCTCCGCATACGTCTTCTATCACGGATCTCCGCCCCTTTCCGTCTCCGCGGCCTCCGATTCCGCCGCCCAGGAGGCAAGATAAGGAGCCGCCAGCAACCAACACGCCCAACTTCGCATGTTTCGCCGAGCACAATAATGCGAGAGGAGATGCAGTGGCGGCGCCGGGACCGTCGTCGAGGTTGAAGAAAGCGATCGCGCCGAGAGAACAAACCACGGTGGTGGAGTCGTGCGACACGCCTTTTGCGGCGACTTCGAGAGTTTCGGAGAACGCGAGATGCTCGGAAGGGGGCGGGCGGCGCGGAAGCATGAGCGGCGCTGGTGAGGCGGCGCCTTCGACGACGGCGTTAGATTTGTCGATGACGTCGTCTCCGGGAGGTTCGTGTAGCAGCGGGGAACTGTTTGACAGGGCAGCGGCAGAGGATCGGAAGCGGAAGGGGAGGGAAGCAGAGGATTGGGAGTGTCAGAGCGAGGATGTTGATTTTGAATCGGCAGAGGCGAAAAAACAAGGTCAAGGTCGTGGTCGTGGTGGATCCACATCCACAAGGAGGTCCCGTGCTGCAGAGGTTCATAATCTCTCCGAGAGGAGGCGCCGTGATCGGATTAATGAAAAGATGAAAGCTCTGCAAGATCTTATACCTCGTTCTAATAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACCTCAAGTCACTGCAGTTACAAGTGCAGATGATGTCAATGGGATGTGGGATGGTACCTACTATGATGTTTCCTGGTATCCAGCATCAGTATATGCCGGCAATGGGAATGGGGATTGGAATGGGTATGGGCATGGAAATGGCGGGAATGGGAATGAACATGAATATGAACATGAACAGACCCGTAATGCCATTTCCCAATATGTTAGCAGCTTCACCTGCTGCTGCTGCTGCTACTCATTTGGGACCAAGGTTCCCTATGCCTCCTTTCCCTGTGCCGCATCACGTGCCTTCTGCACCTAATAATAACACTAGAATAATGCAACAGCAAGCCGCAAATAATAATCAATCGGATAATAATAGTAACATGCCCAATTCAGTTGTTAATAATACTCCTCTTCCTGATCCAAATCATCACTCACGTATCCCAATCTTCACTGATCCTTATCAACAATACCTTGCTCATCATGGTCCCCACCAGATGCAGTTTCAATTAATGCAGAATCAGGCAGTGAACCAGCCAAATGTCAGCAAACCAAGCACAAGTGGCGGCCCCGAAATCCATCATCAGCCAGGTTAG 1587 0.5072 MKNNNNHRVPDLEMEMEEQEYPTRQKKASSMSYNRAEDDVMELLWQNGQVVMHTQNHRPTPTTNHHLFMQEDEMISLLNPPLITNSPLDHTLSSDFLYDNHTAINTTPPHTSSITDLRPFPSPRPPIPPPRRQDKEPPATNTPNFACFAEHNNARGDAVAAPGPSSRLKKAIAPREQTTVVESCDTPFAATSRVSENARCSEGGGRRGSMSGAGEAAPSTTALDLSMTSSPGGSCSSGELFDRAAAEDRKRKGREAEDWECQSEDVDFESAEAKKQGQGRGRGGSTSTRRSRAAEVHNLSERRRRDRINEKMKALQDLIPRSNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPTMMFPGIQHQYMPAMGMGIGMGMGMEMAGMGMNMNMNMNRPVMPFPNMLAASPAAAAATHLGPRFPMPPFPVPHHVPSAPNNNTRIMQQQAANNNQSDNNSNMPNSVVNNTPLPDPNHHSRIPIFTDPYQQYLAHHGPHQMQFQLMQNQAVNQPNVSKPSTSGGPEIHHQPG 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc201g00007 528 CDD bHLH_AtPIF_like 292 355 IPR047265 -
Stsc201g00007 528 MobiDBLite consensus disorder prediction 119 136 - -
Stsc201g00007 528 MobiDBLite consensus disorder prediction 106 177 - -
Stsc201g00007 528 FunFam Basic helix-loop-helix transcription factor 287 350 - -
Stsc201g00007 528 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 290 358 IPR036638 GO:0046983
Stsc201g00007 528 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 292 341 IPR011598 GO:0046983
Stsc201g00007 528 Gene3D - 287 350 IPR036638 GO:0046983
Stsc201g00007 528 SMART finulus 298 347 IPR011598 GO:0046983
Stsc201g00007 528 MobiDBLite consensus disorder prediction 242 259 - -
Stsc201g00007 528 MobiDBLite consensus disorder prediction 1 24 - -
Stsc201g00007 528 PANTHER TRANSCRIPTION FACTOR PIF3 169 466 IPR044273 GO:0003700|GO:0006355
Stsc201g00007 528 MobiDBLite consensus disorder prediction 1 31 - -
Stsc201g00007 528 MobiDBLite consensus disorder prediction 447 472 - -
Stsc201g00007 528 Pfam Helix-loop-helix DNA-binding domain 296 342 IPR011598 GO:0046983
Stsc201g00007 528 MobiDBLite consensus disorder prediction 447 477 - -
Stsc201g00007 528 MobiDBLite consensus disorder prediction 192 300 - -
Stsc201g00007 528 MobiDBLite consensus disorder prediction 221 236 - -
Stsc201g00007 528 MobiDBLite consensus disorder prediction 509 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc201g00007 Stsc-Chr201 32062 36097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc201g00007 37 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.840 1.91e-53 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc201g00007 HLH 3.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc201g00007 - - gmx:100797225 419.468