Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2013g00001 ATGGAACAAAGCATTCCAATAAAACACACTAGGCATCGTAGTGTCACTAACAAGTTCATGAAACAAAAGAAAAATTTTGATCTTGTCCATCTCAATAATTATCCCATTTCCACGAAACCTAAAGTGATTCGTATATTGCTCACTGATCAAGATGCTACCGACTCTTCCTGTGATGAAGAAGAGGAGTTCTTCCCTCGCCAAAGGGTGAAGGAATACATCAACCAAATTAATATTCACCCACCCCCACCCTGCGAAACTGTTTCTAATAATTCCCGAAAGAGGCTTGCTGGAATATCATCCCCTTCATGCCGACGATTGGTGAAGGCCACTACTGCAAGCACCAGCAATAACAACAATGACAACAAGGGCAGAAAGTATCGCGGTGTAAGACAAAGGCCATGGGGTAAATGGGCGGCCGAGATTCGAGATCCTAATCGACACATCCGAGTTTGGCTGGGAACTTTTGACACTGCGGAAGAAGCTGCAAGGGAGTACGATAATGCTGCGATCAAGTTTCGTGGTCCCAAAGCTCTAACAAACTTTTCGATACCACCTGCATCACAAGAAAGGAATGTAAACTTGAAGTTTGAAAGCTATGGTTCTATTTATGACTCATCATGTGAGGATGAGTGCCTCAACATTTCTTCGTCACCTACTTCAGTTCTCCATTCTGCATGTCATAAAATACGAAAATTACAAAAGCACAACAAAGAAAACGATGGCGAGTGTGAAGGTGAAAGGAGTAGTAGTTATTTTGATGAGACATTGGAAATGGGGAATGACATGTTTAACTTTGCAACATATCATGATGAGTGTGTGGCTATGTTTGATGATGAAAGCACTACTACAACACGGATCTTTGTTAGTGAGAGTTTCAAGTTTGGTGATCACATTGAGCTTAGTAATGCAAGTTTGTATCAGGTTGACGATTATTTTGAAGAAATTTTGTTAGGCTCAGATCCTCTTGTGGTGCTCTGA 978 0.4131 MEQSIPIKHTRHRSVTNKFMKQKKNFDLVHLNNYPISTKPKVIRILLTDQDATDSSCDEEEEFFPRQRVKEYINQINIHPPPPCETVSNNSRKRLAGISSPSCRRLVKATTASTSNNNNDNKGRKYRGVRQRPWGKWAAEIRDPNRHIRVWLGTFDTAEEAAREYDNAAIKFRGPKALTNFSIPPASQERNVNLKFESYGSIYDSSCEDECLNISSSPTSVLHSACHKIRKLQKHNKENDGECEGERSSSYFDETLEMGNDMFNFATYHDECVAMFDDESTTTTRIFVSESFKFGDHIELSNASLYQVDDYFEEILLGSDPLVVL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2013g00001 325 FunFam Ethylene-responsive transcription factor 2 124 183 - -
Stsc2013g00001 325 CDD AP2 125 181 IPR001471 GO:0003700|GO:0006355
Stsc2013g00001 325 Gene3D AP2/ERF domain 124 183 IPR036955 GO:0003700|GO:0006355
Stsc2013g00001 325 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Stsc2013g00001 325 MobiDBLite consensus disorder prediction 109 129 - -
Stsc2013g00001 325 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Stsc2013g00001 325 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Stsc2013g00001 325 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Stsc2013g00001 325 Pfam AP2 domain 125 174 IPR001471 GO:0003700|GO:0006355
Stsc2013g00001 325 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 39 233 - -
Stsc2013g00001 325 SUPERFAMILY DNA-binding domain 125 183 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2013g00001 Stsc-Chr2013 850 1827 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2013g00001 6 227 AP2-EREBP Transcription Factor Family AT4G27950 42.601 5.84e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc2013g00001 AP2 1.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2013g00001 - - adu:107494931 496.123