Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc200g00013 ATGAGTGTCATCACAATCCTCTTGTGGAGTCTTTGCTTCTTTGCCTTATTATTGTTACCTTCTGCTTCTGGTCTTGTCTCAGATGGGATAACTCTGCTGTCATTGTTGTCACACTGGACCTTTGTTCCTCCCATTATCAACTCCACCTGGAATCCATCTGATTCTGCTCCATGCTCATGGGTTGGAGTAGAATGTAACCATGCCCACAATGTAGTCTCCCTTAATCTCACTGATCATGGGATTCTCGGTCAACTTGGACCTGAGATTCAACAATTGCATCACTTGCAGACTCTTTTGTTGGCCAATAATGGTTTCTCAGGAGAAGTACCTTCAGAGATAAGTAATTGTAGTTTGCTTCAGCATCTAGACCTTGCTAATAACAGCTTTAGTGGACAGATACCATTTACCTTCAACAAGTTGCAAAATCTCCGATTTATGAGCTTATCATTCAATCTGTTGACTGGTGAGATTCCAGATTCCTTGTTTCAAGTTCATCAACTGCAAGAACTGAACCTTCACTCTAACCATCTCAGTGGTCCTATCCCAACCAGCATAGGAAACTTGACTCAGCTGTTGAGGTTGGATCTACATGGTAATAGGTTGACAGGTACTATTCCTTCATCCATTGGTAATTGCAGCAAATTAGAGGATTTGGTTTTGAATGAGAACAAACTCAAAGGAGAACTACCATTGGAGATGGCTAAGCTCAAGCATCTGAAAAATATCTTACTGTTTGACAATCAGTTATCTGGATTCATACCTCAAGGCTTGGGAATCAATAGCAGCCTAGTGAAGCTGGATCTTACAATGAATGAGTTCACTGGTAATATCCCACTCAATCTCTGCCTTGGAAAACAACTAGGTGTGCTGAACTTGGGATCTAATCAACTTCAAGGTAGCATACCTTCTGATATAGGAATATGTGAAACTCTAAGCATGTTAATTCTTAGTGAAAATCATTTGATCGGTTCTCTTCCGGAGTTCAAGAGTAACCTGAACCTCAAGATCATGGACATAAGCAGGAACAGAATTAGTGGAACTATACCATCAAGTTTGGGGAAGTGCACAAATCTTATTGAAATAAATTTGTCGATGAACAAATTTACTGGCCTAATTCCGCCACAGCTTGGAAAGCTTGTGAATCTTGAGGTTTTGAATCTTGCACATAACAGGTTGGAAGGTGCCTTGCCATATCAGCTGTCAAATTGTACTAAAATGGATAGTTTTGATGTTGGATTCAATTCCCTGAATGGGTCAATCCTGTCAAGTTTTCGTAGTTGGACGGGGTTAACAACATTGATTTTAAGAGAGAATCATTTTACAGGGGGTATCCCAACCTTTCTTTCAGAATATAACAAGCTTCATGAGTTACAGCTTGGTGGAAATTTGTTTGGAGGAAAAATTCCCCCATCATTAGGAAAACTGAAGAATCTGTTCTACAGATTGAATCTGAGTGCTAATGGATTGACAGGGGAAATTCCATTTGAAATTGGGAAGCTAAAAGTACTGTCTAGTCTGGATTTATCCTCAAACAATTTGACTGGAAGCATAGATGTTCTTGGTGAACTTTCATTGATCAACTTGAATGTTTCCTACAATTTCTTCTATGGTCCTGTACCAGAAACTCTGATGAAGTTCTTAAATTCCTCACCGTCTTCATTCTTGGGCAATCCCTATCTATGTGTCAGTTTTTCACCTTCTCATAGCCCAAATTCCACTCAAGCTCATTACTTGAAGCCGTGTGTCTACAAATCAACTTATCATTTAGGCATCAGTATAATTGCTGTGGTGATGATAGAACTTGGTTCTGCAATATTCGTTTCTGCCTTGCTGGTAGCACTAGTTGTCTGCCGGTTAAATGCCTCTCTCACTAGGTGGGGTCGTCATGTTAAAAATGAAAATGAAGATATTATCATACAATTCCCTTGGAATGACCGCATGCTCAAGGACAAGGATGTAATGAACAAAGTAGATGATGGGTGTATTATTGGCGAAGGAGCCCATGGAATAGTTTATAAAGTTCAGCATCATGGTCAAGTTCTTGCAGCAAAGAAGAGTGTATTTAGAGGACAAGGCAACAAGCGCTTAGGAATCATGAAAAGAGAAATTGAAACCCTTTGTATGACTAGGCACAGAAATTTGGTAAAAATCCTGGGGTACGCATTGGCTAAGGACTATGGGGTAATGTTTACTGAATACATGGAAAACGGAAGCCTCCATCATATTTTGCATAAGAAAATCCCACCACCAGAATTAAGCTGGAATGATCGGCTGAAGATAGCTGATGGAGTTGCGCACGGACTAAAATACGTGCATTATGACTGCGATCCGCCGATAGTGCACCGTGACATCAAACCACAGAATATACTCCTTGATGCAGACATGGAGCCTCATATTTCTGATTTTGGTATTGCCAACATCAGGAACCTAGCTGAGGATTCTTATACTCGTTCTGATTTCCCTTGGCAAAAGCTTTCAGTACATATTGCTGGTACTGCTGGCTATATGGCACCAGAATGTGCATATGCAACAGTGCCAAGCAGAAGTTTTGATGTATATAGCTATGGAGTAGTGTTGCTTGAGCTAATAACCAGAAAGAGTGTGTTAGTTGATGGCAAAGAACATATAGTGAGTTGGGTTAGATCTATTTGGGATGATGAAACAAACAAAATTGACAAGATTGTTGATTCATACCTTGCAGCTGAATTTCCTGATTCAGCAGTGTTAAAAAAGCAAGTAACCGCGGTGCTTTTGTTGGCATTGAGATGCACAGAGAGGGATCAACGCAATCGACCAACGATGATAGATGTGGTCAATTTCTACAGAAAAATCCCACATGGAGCCGTGATGGAGGATTTCAACTTCAACAAGCTTATTTGGAAGAACCTTGTCCCTCCGGAGGTGGAAGTATTGGTATGGATGGTCATGCTTGAAACGCCGAATACGAGACATATTCCATCAAATCTTGCTATTTGTCCAATGTGTCAACAAGAACCAGAGGAGTTGAGGTGTGATCATATGGTTAATGATAATAATGATGGTGCTGAAGTTTCTGTTGGCGTAGCACCACAACAACCATTCAATAATGACCCAATTATCAGCACTAATCAAGTTTCCAATACTCAGGATCAGGGAGACTCCTATGTGAATGCAGAAAGTAAAGAACCACAAGATGCCTATGCTTCAGATGATTTGAAACTTGTGTCTGCACCTAAAACTGGTGTTGGATGGACTCATAGTTAA 3243 0.4036 MSVITILLWSLCFFALLLLPSASGLVSDGITLLSLLSHWTFVPPIINSTWNPSDSAPCSWVGVECNHAHNVVSLNLTDHGILGQLGPEIQQLHHLQTLLLANNGFSGEVPSEISNCSLLQHLDLANNSFSGQIPFTFNKLQNLRFMSLSFNLLTGEIPDSLFQVHQLQELNLHSNHLSGPIPTSIGNLTQLLRLDLHGNRLTGTIPSSIGNCSKLEDLVLNENKLKGELPLEMAKLKHLKNILLFDNQLSGFIPQGLGINSSLVKLDLTMNEFTGNIPLNLCLGKQLGVLNLGSNQLQGSIPSDIGICETLSMLILSENHLIGSLPEFKSNLNLKIMDISRNRISGTIPSSLGKCTNLIEINLSMNKFTGLIPPQLGKLVNLEVLNLAHNRLEGALPYQLSNCTKMDSFDVGFNSLNGSILSSFRSWTGLTTLILRENHFTGGIPTFLSEYNKLHELQLGGNLFGGKIPPSLGKLKNLFYRLNLSANGLTGEIPFEIGKLKVLSSLDLSSNNLTGSIDVLGELSLINLNVSYNFFYGPVPETLMKFLNSSPSSFLGNPYLCVSFSPSHSPNSTQAHYLKPCVYKSTYHLGISIIAVVMIELGSAIFVSALLVALVVCRLNASLTRWGRHVKNENEDIIIQFPWNDRMLKDKDVMNKVDDGCIIGEGAHGIVYKVQHHGQVLAAKKSVFRGQGNKRLGIMKREIETLCMTRHRNLVKILGYALAKDYGVMFTEYMENGSLHHILHKKIPPPELSWNDRLKIADGVAHGLKYVHYDCDPPIVHRDIKPQNILLDADMEPHISDFGIANIRNLAEDSYTRSDFPWQKLSVHIAGTAGYMAPECAYATVPSRSFDVYSYGVVLLELITRKSVLVDGKEHIVSWVRSIWDDETNKIDKIVDSYLAAEFPDSAVLKKQVTAVLLLALRCTERDQRNRPTMIDVVNFYRKIPHGAVMEDFNFNKLIWKNLVPPEVEVLVWMVMLETPNTRHIPSNLAICPMCQQEPEELRCDHMVNDNNDGAEVSVGVAPQQPFNNDPIISTNQVSNTQDQGDSYVNAESKEPQDAYASDDLKLVSAPKTGVGWTHS 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc200g00013 1080 Gene3D Phosphorylase Kinase; domain 1 653 734 - -
Stsc200g00013 1080 MobiDBLite consensus disorder prediction 1036 1080 - -
Stsc200g00013 1080 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672|GO:0006468
Stsc200g00013 1080 Gene3D Ribonuclease Inhibitor 334 572 IPR032675 -
Stsc200g00013 1080 Gene3D Transferase(Phosphotransferase) domain 1 735 956 - -
Stsc200g00013 1080 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 285 570 - -
Stsc200g00013 1080 ProSiteProfiles Protein kinase domain profile. 657 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc200g00013 1080 SMART serkin_6 657 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc200g00013 1080 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 61 283 - -
Stsc200g00013 1080 SMART LRR_typ_2 379 403 IPR003591 -
Stsc200g00013 1080 SMART LRR_typ_2 188 212 IPR003591 -
Stsc200g00013 1080 SMART LRR_typ_2 140 164 IPR003591 -
Stsc200g00013 1080 SMART LRR_typ_2 92 116 IPR003591 -
Stsc200g00013 1080 SMART LRR_typ_2 500 523 IPR003591 -
Stsc200g00013 1080 SUPERFAMILY L domain-like 30 326 - -
Stsc200g00013 1080 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Stsc200g00013 1080 ProSitePatterns Protein kinases ATP-binding region signature. 663 685 IPR017441 GO:0005524
Stsc200g00013 1080 Gene3D Ribonuclease Inhibitor 28 184 IPR032675 -
Stsc200g00013 1080 Pfam Protein kinase domain 662 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc200g00013 1080 Gene3D Ribonuclease Inhibitor 261 333 IPR032675 -
Stsc200g00013 1080 Gene3D Ribonuclease Inhibitor 189 260 IPR032675 -
Stsc200g00013 1080 Pfam Leucine rich repeat 333 392 IPR001611 GO:0005515
Stsc200g00013 1080 Pfam Leucine rich repeat 119 177 IPR001611 GO:0005515
Stsc200g00013 1080 SUPERFAMILY RNI-like 262 549 - -
Stsc200g00013 1080 MobiDBLite consensus disorder prediction 1036 1051 - -
Stsc200g00013 1080 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 290 935 - -
Stsc200g00013 1080 ProSiteProfiles Leucine-rich repeat profile. 502 524 IPR001611 GO:0005515
Stsc200g00013 1080 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 734 948 - -
Stsc200g00013 1080 SUPERFAMILY Protein kinase-like (PK-like) 644 940 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc200g00013 Stsc-Chr200 70224 74217 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc200g00013 94 948 Receptor kinase-like Gene Family AT1G73080 46.667 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc200g00013 Pkinase 2.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc200g00013 - - adu:107496784 1506.89