Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1g00093 ATGGCGAGCAGGTACTGGGTGGTGTCTCTTCCCGTCCACAACTCCGCTTCCACTCTCTGGAACCAGCTCCAGGATCAAATCTCCAAACACTCTTTCGACACCCCTCTCTACAGGTTCAACATCCCTAATCTCCGCGTCGGAACCCTAGACTCTCTTCTCTCTCTCAGCGATGATCTCGCCAAGTCCAACACTTTCATGGAAGGAGTGTCCCACAAGATCCGGCGCCAGATTGAGGAACTTGAGAGGATCTCTGGCGTCGAGAGCAGTGGCCTCACTGTCGATGGTGTCCCTGTTGATTCCTATTTGACCAGATTTGTTTGGGATGAAGCAAAGTACCCTACTATGTCACCGTTGAAGGAAATCGTTGATGCAATTCATGGTCAAGTTGCAAAGATTGAGGATGATCTCAAGGTTCGCGTTTCTGAGTACAACAATATCCGCGGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGCTTAGCTGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGATATTATAACTTCAGAACATTTAACTACTCTTCTTGCCGTTGTTTCCAAGTATTCACAGAAGGATTGGCTCGCAAGCTATGAAACACTGACAAACTATGTGGTCCCCAGATCTTCCAAGAAGTTGTATGAGGATAATGAATATGCTCTTTACACTGTAACACTCTTCAGTCGTGTTGCAGACAACTTCAGAACTAGTGCACGTGAAAAAGGGTTTCAAATTCGTGATTTTGAATTCAATCCAGAAACACATGAGGGCCGAAAGCAAGAGTTAGATAAATTGATGCGAGATCAGGAATCTTTGAGAGGTTCTTTGTTGCAGTGGTGCTATACCAGCTATGGAGAGGTTTTCAGCTCGTGGATGCACTTCTGTGCTGTACGTTTGTTTGCTGAGAGCATTCTGAGATATGGTCTACCACCATCTTTCTTGGTAACTATGTTCCTCTAA 966 0.4534 MASRYWVVSLPVHNSASTLWNQLQDQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLAKSNTFMEGVSHKIRRQIEELERISGVESSGLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDAIHGQVAKIEDDLKVRVSEYNNIRGQLNAINRKQTGSLAVRDLSNLVKPEDIITSEHLTTLLAVVSKYSQKDWLASYETLTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREKGFQIRDFEFNPETHEGRKQELDKLMRDQESLRGSLLQWCYTSYGEVFSSWMHFCAVRLFAESILRYGLPPSFLVTMFL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1g00093 321 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 2 319 IPR004907 GO:0033180|GO:0046961|GO:1902600
Stsc1g00093 321 SUPERFAMILY Vacuolar ATP synthase subunit C 2 320 IPR036132 GO:0015078|GO:0033180|GO:1902600
Stsc1g00093 321 CDD V-ATPase_C 5 320 IPR004907 GO:0033180|GO:0046961|GO:1902600
Stsc1g00093 321 Gene3D Vacuolar atp synthase subunit c; domain 1 5 318 - -
Stsc1g00093 321 Gene3D - 41 312 - -
Stsc1g00093 321 Pfam V-ATPase subunit C 5 319 IPR004907 GO:0033180|GO:0046961|GO:1902600
Stsc1g00093 321 Gene3D - 163 251 - -
Stsc1g00093 321 FunFam V-type proton ATPase subunit C 163 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1g00093 Stsc-Chr1 856001 859542 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1g00093 1 320 Primary Pumps ATPases(2) AT1G12840 84.688 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1g00093 K02148 - gmx:100813963 579.326