Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1g00084 ATGGAGAGAGACATGCTTCCGTTGTCAGAACCAGCAAGGCCTCTTCCTCACAGCACTAACGCCGCCGTTTCTTGGACGGAGCCCTTACTTGGAGAAGAAAGCGCTGCTGACATTGGAATTCCCATGAATGCCCCTCTTACTTCCTTCAAATCCATACCCCAACCGGGTCAAATTACCATAAACCCCTTCCCCTTCCTCCAACAACAAACCGTACCCGCTACTGCTGCTGCAGCTGCTAATTCTAATGATAACAACTTTCTCTCACAACAAAATATGGACAACTTTGCCCTCGAACACTCTTTCTCTACTCTCAAACCCTCGTTCTTCACCACCACCACCACCAACAACAACAATCCTTTTGATAATGCCTTCGATTTCGGACCTGACAACGGTTTCTTCTTCTCCAGTAACCATTCTTCCACTTCCCCTCTCTTGATGGCTTTTTCTCAGCCTCTAATTGGCTCCGCTGACATGAGTTCCGGCACTGAATTCCCGCCGGCGACGCGGTTGCTCCCGGCGGGGGACGATGCCGCGGCGCTGGGTGCTGGATTTGAAATGGAGCCGTTTGGTGGCTCTGGAAATGCTCTGTTTTCGAGCAGGGGAAAGGGATTGAGGCCTCTTGAGGTGGCTCCGACGGTTGGTGCGCCTCCCACGCTCTTCCAGAAGCGTGCCGCGCTCCGTCGAGGCTCCGGCGGGTCCGAGAGTCTCGAGGCTTTGGGGATGGGGAGTTTGGAGAGGAAATGGGGAGTGGGGGAAGCTGAAGAGGGGAGCATTGAGGCTTCAGTGTGGAATTATGATTCTGATGAGAATGTTGAGAGTGGTAGTAAGGCGGTGGTGGTGGTGGAGGAGAGTGGGAATCATGGCGGTGGAGGGAATGGGAATTTGAGCTTGAGTGGTGGCGGTGTCAATGGTGGAGATCAGAAAGGGAAGAAGAAGGGGATGCCGGCGAAGAATCTCATGGCCGAGAGGCGGCGCCGGAAGAAGCTTAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGACAGGGCTTCGATACTTGGGGATGCGATCGACTACTTGAGGGAGTTACTGCAGCGGATTAATGATCTTCACAATGAACTGGAGTCTTCTCCNNNNNNNNNNGCCTTCAGCCTTTGA 1155 0.5247 MERDMLPLSEPARPLPHSTNAAVSWTEPLLGEESAADIGIPMNAPLTSFKSIPQPGQITINPFPFLQQQTVPATAAAAANSNDNNFLSQQNMDNFALEHSFSTLKPSFFTTTTTNNNNPFDNAFDFGPDNGFFFSSNHSSTSPLLMAFSQPLIGSADMSSGTEFPPATRLLPAGDDAAALGAGFEMEPFGGSGNALFSSRGKGLRPLEVAPTVGAPPTLFQKRAALRRGSGGSESLEALGMGSLERKWGVGEAEEGSIEASVWNYDSDENVESGSKAVVVVEESGNHGGGGNGNLSLSGGGVNGGDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLRELLQRINDLHNELESSPXXXAFSL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1g00084 384 FunFam BHLH transcription factor 309 377 - -
Stsc1g00084 384 SMART finulus 319 368 IPR011598 GO:0046983
Stsc1g00084 384 MobiDBLite consensus disorder prediction 1 20 - -
Stsc1g00084 384 Gene3D - 307 376 IPR036638 GO:0046983
Stsc1g00084 384 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 127 376 - -
Stsc1g00084 384 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 362 IPR011598 GO:0046983
Stsc1g00084 384 CDD bHLH_AtAMS_like 316 377 - -
Stsc1g00084 384 Pfam Helix-loop-helix DNA-binding domain 320 362 IPR011598 GO:0046983
Stsc1g00084 384 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 310 376 IPR036638 GO:0046983
Stsc1g00084 384 MobiDBLite consensus disorder prediction 283 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1g00084 Stsc-Chr1 714573 718198 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1g00084 113 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.526 9.34e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc1g00084 HLH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1g00084 - - aip:107647300 495.352