LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc1g00084	ATGGAGAGAGACATGCTTCCGTTGTCAGAACCAGCAAGGCCTCTTCCTCACAGCACTAACGCCGCCGTTTCTTGGACGGAGCCCTTACTTGGAGAAGAAAGCGCTGCTGACATTGGAATTCCCATGAATGCCCCTCTTACTTCCTTCAAATCCATACCCCAACCGGGTCAAATTACCATAAACCCCTTCCCCTTCCTCCAACAACAAACCGTACCCGCTACTGCTGCTGCAGCTGCTAATTCTAATGATAACAACTTTCTCTCACAACAAAATATGGACAACTTTGCCCTCGAACACTCTTTCTCTACTCTCAAACCCTCGTTCTTCACCACCACCACCACCAACAACAACAATCCTTTTGATAATGCCTTCGATTTCGGACCTGACAACGGTTTCTTCTTCTCCAGTAACCATTCTTCCACTTCCCCTCTCTTGATGGCTTTTTCTCAGCCTCTAATTGGCTCCGCTGACATGAGTTCCGGCACTGAATTCCCGCCGGCGACGCGGTTGCTCCCGGCGGGGGACGATGCCGCGGCGCTGGGTGCTGGATTTGAAATGGAGCCGTTTGGTGGCTCTGGAAATGCTCTGTTTTCGAGCAGGGGAAAGGGATTGAGGCCTCTTGAGGTGGCTCCGACGGTTGGTGCGCCTCCCACGCTCTTCCAGAAGCGTGCCGCGCTCCGTCGAGGCTCCGGCGGGTCCGAGAGTCTCGAGGCTTTGGGGATGGGGAGTTTGGAGAGGAAATGGGGAGTGGGGGAAGCTGAAGAGGGGAGCATTGAGGCTTCAGTGTGGAATTATGATTCTGATGAGAATGTTGAGAGTGGTAGTAAGGCGGTGGTGGTGGTGGAGGAGAGTGGGAATCATGGCGGTGGAGGGAATGGGAATTTGAGCTTGAGTGGTGGCGGTGTCAATGGTGGAGATCAGAAAGGGAAGAAGAAGGGGATGCCGGCGAAGAATCTCATGGCCGAGAGGCGGCGCCGGAAGAAGCTTAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGACAGGGCTTCGATACTTGGGGATGCGATCGACTACTTGAGGGAGTTACTGCAGCGGATTAATGATCTTCACAATGAACTGGAGTCTTCTCCNNNNNNNNNNGCCTTCAGCCTTTGA	1155	0.5247	MERDMLPLSEPARPLPHSTNAAVSWTEPLLGEESAADIGIPMNAPLTSFKSIPQPGQITINPFPFLQQQTVPATAAAAANSNDNNFLSQQNMDNFALEHSFSTLKPSFFTTTTTNNNNPFDNAFDFGPDNGFFFSSNHSSTSPLLMAFSQPLIGSADMSSGTEFPPATRLLPAGDDAAALGAGFEMEPFGGSGNALFSSRGKGLRPLEVAPTVGAPPTLFQKRAALRRGSGGSESLEALGMGSLERKWGVGEAEEGSIEASVWNYDSDENVESGSKAVVVVEESGNHGGGGNGNLSLSGGGVNGGDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLRELLQRINDLHNELESSPXXXAFSL	384

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc1g00084	384	FunFam	BHLH transcription factor	309	377	-	-
Stsc1g00084	384	SMART	finulus	319	368	IPR011598	GO:0046983
Stsc1g00084	384	MobiDBLite	consensus disorder prediction	1	20	-	-
Stsc1g00084	384	Gene3D	-	307	376	IPR036638	GO:0046983
Stsc1g00084	384	PANTHER	TRANSCRIPTION FACTOR SCREAM2-RELATED	127	376	-	-
Stsc1g00084	384	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	313	362	IPR011598	GO:0046983
Stsc1g00084	384	CDD	bHLH_AtAMS_like	316	377	-	-
Stsc1g00084	384	Pfam	Helix-loop-helix DNA-binding domain	320	362	IPR011598	GO:0046983
Stsc1g00084	384	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	310	376	IPR036638	GO:0046983
Stsc1g00084	384	MobiDBLite	consensus disorder prediction	283	313	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc1g00084	Stsc-Chr1	714573	718198	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc1g00084	113	377	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT3G26744	50.526	9.34e-61	201

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Stsc1g00084		HLH	2.7e-09	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc1g00084	-		-	aip:107647300	495.352

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