Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1g00078 ATGACAGCCCCTACTATGAGTTCCTTCAAATCCATACCCCAACCTCCTCCAAATACCATGAATCCCTTCCCCTTCCTCCAACAACAAACCGAATCCACTCTCCCTCCCACTACTATTGATAACAACAACTTTCTCGCACAACAAAACATGGACTCGTTCGCTCTCCAACACCCTTTCTCTACTTTCAAACCCTCTTTCTTCAACAACAACAATCCTTTTGATAATGCCTTCGATTTCGGAGCACACACCGGTTTCTTCTTCTCCGGTACTGAAGAATTCCCGCTGGCGACTGATGCCATGGCGCTGGGTGCTGGATTTGGTGCCTCGGCTGGGTTTGAAATGGAGGAATTCGGTGGCTCTGGAAATGCTCTGTATTCGAGTGGGAGAAAGGGATTGTGGCCTCTTGAAGTGCTTCCTACGGTTGTGGTCCCGCCCACGGCGCTCGAGGAAGTTGGAGAAGGTAGCATTGAGGGTTCAGTGTGGAATTCTGATGATGGGAGTAGTAAGGTGGTGGTGGTTGAGGAGAGTGAGAATGGAGGGCTGAAGGGGAAGAAGAAGAAGAATGGGATGCCGGCGAAAAATCTCATGGCGGAGAGGCGGCGAAGGAAAAAGCTCAATGATAGGTTGTACATGCTCAGGTCTGTTGTCCCCAAGATTAGCAAGATGGATAGAGCTTCAATACTTGGGGATGCAATTGACTACATGAATGAGTTACTGCAGCAAGTTAATGATCTTCACAATGAACTGGAGTCAACTCCACCTTGCTCTTCGCTGTCATCTTCCAATGGCCTTCAACCTTTGACACCCACACCACAAACCCTTCCTTGCCGGGTAAAGGAAGAACTGTATCCTGCCATCTTGCCAGTCCCCAAAAACCAAACAGCAAAG 888 0.4887 MTAPTMSSFKSIPQPPPNTMNPFPFLQQQTESTLPPTTIDNNNFLAQQNMDSFALQHPFSTFKPSFFNNNNPFDNAFDFGAHTGFFFSGTEEFPLATDAMALGAGFGASAGFEMEEFGGSGNALYSSGRKGLWPLEVLPTVVVPPTALEEVGEGSIEGSVWNSDDGSSKVVVVEESENGGLKGKKKKNGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYMNELLQQVNDLHNELESTPPCSSLSSSNGLQPLTPTPQTLPCRVKEELYPAILPVPKNQTAK 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1g00078 296 FunFam BHLH transcription factor 184 253 - -
Stsc1g00078 296 MobiDBLite consensus disorder prediction 249 272 - -
Stsc1g00078 296 CDD bHLH_AtAMS_like 192 261 - -
Stsc1g00078 296 MobiDBLite consensus disorder prediction 249 273 - -
Stsc1g00078 296 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 238 IPR011598 GO:0046983
Stsc1g00078 296 Gene3D - 182 252 IPR036638 GO:0046983
Stsc1g00078 296 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 64 262 - -
Stsc1g00078 296 Pfam Helix-loop-helix DNA-binding domain 196 238 IPR011598 GO:0046983
Stsc1g00078 296 MobiDBLite consensus disorder prediction 1 25 - -
Stsc1g00078 296 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 253 IPR036638 GO:0046983
Stsc1g00078 296 SMART finulus 195 244 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1g00078 Stsc-Chr1 690477 693567 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1g00078 42 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 44.127 9.60e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc1g00078 HLH 2.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1g00078 - - ahf:112697118 266.159