Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1g00058 ATGTCCATCTTGCCCTCACAAACCCAGGCAGCACCATCGTCTTCTTCATCTCCTTCTACTTCAAACCCTAATTCCCAACATGGCTTCCCAAATTCTCTTCCTTCTTCCTCAATTTCCTCTCTCTCTTCACAATTCAACAACTGCCACAACAACAACATCGCTGTTTCTTTCGGATCCCTTCGGATCTCTGATCCCCAATCTCCCCGCCACCATCCAGGTTCATCAACTCAAGCTACAGAAGATTCTGGTGGACCGTCCGAAAAGGTGATGGAGTCTGTGTCTCCAAGTGGTATAAAGTCTTCTTCACCTCCACAAAACACTGGAACACATTCTAGGAGTCACACTGGAAAACGAGTTGGTGGATCACCCCACTCATCAGGGAAGACAGCGGGAATGCTTTCCTCCCATAGAAATCAACAGAATCCTGTGTCTGGAAGTTCCCCACCACTGGGAAGGAGATCTCAGATGGTGAATGGCAATTATTTGCTGAATTTTCAATATGATCCAATATCCCGTTCTCAACCAAGAGGGCCTCCACCACCTCTTCCAAGAAGGCAACAGAAGAGAAGGCCATACAACAGGGATTTGTTTCTGCAGGCAAACTATAGATTCATGGTGCTAGATACAGGAGATTATTGTCCCAAGTCAATGGATCCAGATAAAATGTTGCAGTGGGAGGATATTATATGTGTGACATATTCAACTCCCTTCCCAGTTCAGTGTCCAATTTGTTTGGAATATCCTTTGTGTCCCCAGATAACCTCATGTGGACATATTTTTTGTTTCCCATGTATTCTGCAGTACTTGATGCTGGGTGAAGAGGATCAAAGAGGTGATTGTTGGAAAAGGTGTCCTTTATGCTTTGTGATGATATCTTCCAAGGATTTGTATACTGTCCACATCACAAATGTCAAACAGTATCAAGTAGGGGATACTATTGAGTTTGCATTTTTAACAAGAAAAAAGGATTCATTTACCTTATCTCATAAAAATAAACTAGAGACTGATATTGCTTCAAGTAGTGATGGAGATTTATGTGATCCGTTCTCCAAGTTCACACTCACATTAGATGTAGATCTCTCTGTTAGACATGCAATATCAGATCTAGATGGCTGGTTGGCAAGAGCTGATTCAGGGCTTGTTGATGACCTTGAGAAGCTTCCATATGTTTATGCTGCAATGCAACAACTAAAACAGAGGAAGAAATATTGGAATGAACATAGGGCTTCTGACATTGGAAAATCTTCAAGGCATATTGATTCTGAACATCAGATACAATTAATAGCTGGAAATGCTTTTGATGATGATGGTGAAACCCATTCTAATGGCTCAAGGATTTCCACTGTAGAATTCCAGGACCAAAGTAAGGGAGTAATATTGGATAAGTCAACTGTTGGAGCTGCTCCACATCAAACTTCGGATGGAGAGAAATTATTAATAGAACAAGAAATCAATCTAACCTCTTCATACGAGGACAAAGATGGTGTTCAAAGGCATTCAAATGGAATTGGAGAAACAAAGGAGAATGATTCTTACAATTTCTTCCAGGCTGTGGATGGCCAGCATATAATTCTCCATCCACTGAACACAAAATGTTTGCTTCATCATTACGGGAGCTATGACATGTTTCCACACAGAATAACAGGAAAGATTCTGCAAATGGAAACAGTTACCCAGTCCGAGGCCATGAGGAGGCGATATAAATTCTTAAGTCATTTTCCGTTGACAACAACTTTTCAGCTTTGTGAAATTGATTTGAGTGAGATGTTGCCTCCTGAAGCACTGGCCCCATTTATGGATGAAATAAAGAAGCGTGCACACCAGAGGAAACAACTTGCGAAGAAGGAGAGAAAGGAAAAATTCAAGGCTGAAGCTGCTGCTGGTTATTCTTATCCCATTCCAAGTTATAAACTTGCTTCGTATGATGATACTCCAACGTTTTCTATGGATGACTTTGAAGCCTTGGGAAATCCAGCAATGTCATCAAGTCCGCCAGTTGTTGGGGAAAGAAAAACATTCTCAAATGTTACCCGGCTAGGATTTGCTGCTGCTCATGATTCTCCATCCTTACAAATCCAAGAAACCAGCAGTTCCAATAATAATAATACGGTCACTAGTCCTACTGGCACGACAGGTCCAAGAAATGTGGAGACACCATCATACTCCAATGTTACATCCAGAGCTGAATCAAATATAAACATGAACGCACCAATGACAAATGACTTGGGAAAGAAGCGGAAAAAGCAAAATCGAGTCCTTCTGTCGACATCTGGAGGCAGGCGTTACTAA 2289 0.4159 MSILPSQTQAAPSSSSSPSTSNPNSQHGFPNSLPSSSISSLSSQFNNCHNNNIAVSFGSLRISDPQSPRHHPGSSTQATEDSGGPSEKVMESVSPSGIKSSSPPQNTGTHSRSHTGKRVGGSPHSSGKTAGMLSSHRNQQNPVSGSSPPLGRRSQMVNGNYLLNFQYDPISRSQPRGPPPPLPRRQQKRRPYNRDLFLQANYRFMVLDTGDYCPKSMDPDKMLQWEDIICVTYSTPFPVQCPICLEYPLCPQITSCGHIFCFPCILQYLMLGEEDQRGDCWKRCPLCFVMISSKDLYTVHITNVKQYQVGDTIEFAFLTRKKDSFTLSHKNKLETDIASSSDGDLCDPFSKFTLTLDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVYAAMQQLKQRKKYWNEHRASDIGKSSRHIDSEHQIQLIAGNAFDDDGETHSNGSRISTVEFQDQSKGVILDKSTVGAAPHQTSDGEKLLIEQEINLTSSYEDKDGVQRHSNGIGETKENDSYNFFQAVDGQHIILHPLNTKCLLHHYGSYDMFPHRITGKILQMETVTQSEAMRRRYKFLSHFPLTTTFQLCEIDLSEMLPPEALAPFMDEIKKRAHQRKQLAKKERKEKFKAEAAAGYSYPIPSYKLASYDDTPTFSMDDFEALGNPAMSSSPPVVGERKTFSNVTRLGFAAAHDSPSLQIQETSSSNNNNTVTSPTGTTGPRNVETPSYSNVTSRAESNINMNAPMTNDLGKKRKKQNRVLLSTSGGRRY 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1g00058 762 ProSitePatterns Zinc finger RING-type signature. 256 265 IPR017907 -
Stsc1g00058 762 MobiDBLite consensus disorder prediction 1 47 - -
Stsc1g00058 762 SUPERFAMILY RING/U-box 240 294 - -
Stsc1g00058 762 MobiDBLite consensus disorder prediction 688 738 - -
Stsc1g00058 762 FunFam RING finger protein 10 234 302 - -
Stsc1g00058 762 Pfam Zinc finger, C3HC4 type (RING finger) 241 287 IPR018957 GO:0046872
Stsc1g00058 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 320 IPR013083 -
Stsc1g00058 762 CDD RING-HC_RNF10 239 296 - -
Stsc1g00058 762 MobiDBLite consensus disorder prediction 685 762 - -
Stsc1g00058 762 PANTHER RING FINGER 10 FAMILY MEMBER 66 762 IPR039739 -
Stsc1g00058 762 MobiDBLite consensus disorder prediction 61 155 - -
Stsc1g00058 762 ProSiteProfiles Zinc finger RING-type profile. 241 287 IPR001841 -
Stsc1g00058 762 MobiDBLite consensus disorder prediction 93 155 - -
Stsc1g00058 762 SMART ring_2 241 287 IPR001841 -
Stsc1g00058 762 MobiDBLite consensus disorder prediction 168 190 - -
Stsc1g00058 762 MobiDBLite consensus disorder prediction 61 83 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1g00058 149 712 C3H Transcription Factor Family AT3G26730 56.186 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1g00058 K26979 - gmx:100798764 964.911