Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1g00055 ATGACAACCCTATCCGCGGGTATCCAATTCGATCCAATCCGGTCGGTTGTAAAAATCGTATCGAATCGGCCGGTTCGACTAGAAAAACCAGAAAACCGGACTCCTGGCCGGTTGACAAGGCCAAAGGACCGGACCTGCATACAAACCGGTGTCAACTGGTTTAGACCGGGCGCCGCCGCCTATCCGTCGCCGTGCTGCCACCGAGCTGCCGCCCCGTCGTCTCCGTTCTCTGCTGCGTCGCGTGGTCCGTGCTCTGCTGCGTTCGCGTCGTCGTTCCGTGCTCTGCTCTGCCGATTCGTCTGCGCCAGTCACTGCCGGCAGCCTCCGCTTGTCTTCCTCGCCGTCGTTCTGTCCACTGCCTCATCAATCTCTGTTGAAAAGTTGGAAGAACTCACCGGCAGCAACCATCCCAATCCAATCATGTTAGGTCTCCGCAACGCTGCGAATGTTGTTAACCGCCTTCGTGAAAACCTCTCGGTTTGGGGCGTGCGTGCACATAATATAAACATAGGAGGTGGTGTTGGAGGTGAAATCCCAGACCAGAAGCGTCTCCAGTATGCTCTTCAGCATATCCATGGCATTGGTCGTTCCAAGGCTCATCACATTGTTTGCGAGCTTGGTGTCGAGAACAAATACGTTAGGGACCTTAGCAAGAGAGAGTTGTACTCCCTGCGCGAATTGCTTTCCAAGTACTTGATTGGGAATGATTTGAAAAAATGTGTTGAGAGAGATGTGGGGAGGTTAGTGGGGATTCAGTGCTACAGAGGCATCAGGCACGTCGATGGCTTACCCTGTCGAGGCCAGCGAACTCATACCAATGCCCGCACCAGGAAGAGCAGACCTACTGTTAGGGGAACAAGATGA 864 0.5405 MTTLSAGIQFDPIRSVVKIVSNRPVRLEKPENRTPGRLTRPKDRTCIQTGVNWFRPGAAAYPSPCCHRAAAPSSPFSAASRGPCSAAFASSFRALLCRFVCASHCRQPPLVFLAVVLSTASSISVEKLEELTGSNHPNPIMLGLRNAANVVNRLRENLSVWGVRAHNINIGGGVGGEIPDQKRLQYALQHIHGIGRSKAHHIVCELGVENKYVRDLSKRELYSLRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDGLPCRGQRTHTNARTRKSRPTVRGTR 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1g00055 287 Hamap 30S ribosomal protein S13 [rpsM]. 162 286 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc1g00055 287 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 167 280 - -
Stsc1g00055 287 SUPERFAMILY S13-like H2TH domain 175 279 IPR010979 GO:0003676
Stsc1g00055 287 ProSiteProfiles Ribosomal protein S13 family profile. 174 279 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc1g00055 287 Pfam Ribosomal protein S13/S18 175 276 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc1g00055 287 Gene3D 30s ribosomal protein s13, domain 2 241 284 IPR027437 -
Stsc1g00055 287 MobiDBLite consensus disorder prediction 271 287 - -
Stsc1g00055 287 ProSitePatterns Ribosomal protein S13 signature. 255 268 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc1g00055 287 Gene3D - 174 239 - -
Stsc1g00055 287 MobiDBLite consensus disorder prediction 267 287 - -
Stsc1g00055 287 FunFam 30S ribosomal protein S13 174 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1g00055 Stsc-Chr1 531144 534741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1g00055 163 279 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 28.369 9.97e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1g00055 K02952 - gmx:100527465 229.95