Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1g00052 ATGGTTGCGCAGGTTGAAGGTGCGGCCGCTCTTATTCCGAGCACGATTGTTCTCGGCGACGTCGATTCTGAGTTTTCGATGGTTCCGAGGACGGAAAAGGGCTCCGAGCTCGAAATGCCGGCGAGGAACAGTGGCGAAAAGGGAGGGAAGAAGAATCCGGCGAAGAACACGCCGGTGCAGCGCAGAGCCAGTGCGAGAATCCAAGCGGCGAAGCAAAAGGCGGAGGAGGAGGAGCAAGCTCGTCCTGGAGCGGGTGTAGTAGAAGAAGAGAAAGAGAAAGAGAAAAGTGTGAAAGTGGTGAAGAAGGGGAGCAAGAAGCGCGTGAGGAATGGGGAGAGCTTGGTCGAAGAAGACGGAGAGGTTGTTGGTGGTGGTGGTTCTTCGCCAAAGAAGGGGAACGAGGGCAGTGGAAGCGATGAGAGTGTTGAGGAGGGGGATGGAGAGGGTGGTGTTGGTCCTTCCTTGCCGAAGAAGCTGAAGGGGCGCCCGATGATGAATGATCAAAATGGAGTAGCGGATTCTGAAAATAAAGGAGCTGCCTTAAGGGTGAAGGAGACGATTAGGGTCTACAACAAGCATTACCTTCATTTTGTTCAGGAGGAAGAGAAGAGATGCGGGAAAGTGAATGCTGAAAGGAAAGCTGCTAAGCAGTCAAAGTCTTCAAAATCGAAGAAAGGGAAACAAGTCAAACAACCTGAAGTTAAGAAAGCTCATCAACGACCTGATCTAAAGGCATTATCCAAGATGATGGCAAGTAATGAGATATTGTACCCTGAGAAAAGAATTGGTCACCTTCCAGGCATTGAAGTTGGACATCAGTTCTATTCACGAGGTGAAATGGTTGCTGTTGGTTTTCATAGTCATTGGTTAAATGGCATTGATTATATGGGCAAATCCTATGAAAAAGAGAGCAGCACTTACGAATTCCCTGTTGCTGTGGCTATTGTTTTGTCGGGCCAGTACGAAGATGATCTTGATAATGCTGATGATGTTGTGTATACTGGTCAAGGTGGGCATAACTTGACAGGTGATAAGCGCCAAATTAAAGATCAAAAGTTAGAGCGGGGTAACTTAGCACTCAAGAATTGTATTGCTCAGTCTGTGCCTGTTAGGGTGATTCGCGGTCATAATAAATCTTCAAACGCTGCTACTAAAATCTATACATATGACGGATTGTACCAGGTTGTCAAGTATTGGGCAGAGAAGGGAATATCTGGATTTACAGTCTACAAATTCAGACTTAAGAGGATTGAAGGACAGCCAAATTTAACCACAAATCAGGTTCATTTCACACGTGGGCGTGTACCGCAGTCAACTGCAGAAATACGAGGGTTGGTATGTGAGGATATAACGGGAGGTCAAGAAAATATTCCTATTCCTGCTACAAATTTGGTTGATGATCCTCCTGTTGCACCAACAGATTTTACATATTGCAACATTGTTAAGGTTGCAAAAAATGTAAAGTTTCCCAAAGCTGCCGTTGGATGTAAATGCAAGGGCCTCTGTATTGACTCTACAACATGTGAATGTGCATTGCGTAATGGATCTGAATTTCCCTACGTAGCACAGAATGGTGGCAGGTTAGTTAAAGCTAAAGATGTTGTCTTTGAATGTGGTCCCAACTGTGGCTGTGATGCAACTTGTGTGAATCGGACTTCTCAAAAAGGGATTCGATATCGTCTGGAGGTTTTCCGTACTCCAAAGAAAGGATGGGCTGTTAGATCATGGGATTTTATACCAGCTGGAGCACCAGTTTGTGAATACACAGGAATACTTGCTAGGACTGAAGATATGGACAGTGTATTGGAGAACAATTATATTTTCGAGATAGATTGCTTACAAACAATCAAGGGTATTGGTGGAAGAGAGAGGCGATCGGAAAGCGCTAAATTTCCATCAAATCTTTTGGATAAATATGAAGACCACGGTTCAGAAGGTGCACCAGAATATTGTATTGATGCTGGATCCACCGGCAATATTGCTAGGTTTATCAACCACTGTTGCGAGCCAAATTTGTTTGTTCAATGTGTCCTGAGCACCCACCATGACCTGAAATTTGCCCGAGTGATGCTGTTTGCTGCTGACAACATACCCCCACTGCAGGAGCTGACATATGACTATGGTTATGAGCTTGATAGTGTATTGGGTCCTGATGGAAAGATAAAACAAGTGGCATGCTATTGTGGAGCTCCTAGTTGCAGGAAGCGATTATTCTAA 2217 0.4502 MVAQVEGAAALIPSTIVLGDVDSEFSMVPRTEKGSELEMPARNSGEKGGKKNPAKNTPVQRRASARIQAAKQKAEEEEQARPGAGVVEEEKEKEKSVKVVKKGSKKRVRNGESLVEEDGEVVGGGGSSPKKGNEGSGSDESVEEGDGEGGVGPSLPKKLKGRPMMNDQNGVADSENKGAALRVKETIRVYNKHYLHFVQEEEKRCGKVNAERKAAKQSKSSKSKKGKQVKQPEVKKAHQRPDLKALSKMMASNEILYPEKRIGHLPGIEVGHQFYSRGEMVAVGFHSHWLNGIDYMGKSYEKESSTYEFPVAVAIVLSGQYEDDLDNADDVVYTGQGGHNLTGDKRQIKDQKLERGNLALKNCIAQSVPVRVIRGHNKSSNAATKIYTYDGLYQVVKYWAEKGISGFTVYKFRLKRIEGQPNLTTNQVHFTRGRVPQSTAEIRGLVCEDITGGQENIPIPATNLVDDPPVAPTDFTYCNIVKVAKNVKFPKAAVGCKCKGLCIDSTTCECALRNGSEFPYVAQNGGRLVKAKDVVFECGPNCGCDATCVNRTSQKGIRYRLEVFRTPKKGWAVRSWDFIPAGAPVCEYTGILARTEDMDSVLENNYIFEIDCLQTIKGIGGRERRSESAKFPSNLLDKYEDHGSEGAPEYCIDAGSTGNIARFINHCCEPNLFVQCVLSTHHDLKFARVMLFAADNIPPLQELTYDYGYELDSVLGPDGKIKQVACYCGAPSCRKRLF 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1g00052 738 ProSiteProfiles YDG domain profile. 263 416 IPR003105 -
Stsc1g00052 738 SMART G9a_1 258 420 IPR003105 -
Stsc1g00052 738 Gene3D - 246 435 IPR036987 -
Stsc1g00052 738 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 55 731 - -
Stsc1g00052 738 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 246 433 - -
Stsc1g00052 738 Pfam SET domain 570 708 IPR001214 GO:0005515
Stsc1g00052 738 MobiDBLite consensus disorder prediction 226 243 - -
Stsc1g00052 738 MobiDBLite consensus disorder prediction 205 244 - -
Stsc1g00052 738 SMART PostSET_3 722 738 IPR003616 -
Stsc1g00052 738 MobiDBLite consensus disorder prediction 29 49 - -
Stsc1g00052 738 MobiDBLite consensus disorder prediction 29 177 - -
Stsc1g00052 738 SMART preset_2 447 543 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc1g00052 738 MobiDBLite consensus disorder prediction 68 99 - -
Stsc1g00052 738 SUPERFAMILY SET domain 444 715 IPR046341 -
Stsc1g00052 738 ProSiteProfiles SET domain profile. 559 708 IPR001214 GO:0005515
Stsc1g00052 738 Pfam Pre-SET motif 451 551 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc1g00052 738 Coils Coil 198 218 - -
Stsc1g00052 738 Gene3D SET domain 440 738 IPR046341 -
Stsc1g00052 738 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 88 738 IPR025794 GO:0016571
Stsc1g00052 738 Coils Coil 60 80 - -
Stsc1g00052 738 SMART set_7 559 714 IPR001214 GO:0005515
Stsc1g00052 738 ProSiteProfiles Post-SET domain profile. 722 738 IPR003616 -
Stsc1g00052 738 SUPERFAMILY PUA domain-like 245 437 IPR015947 -
Stsc1g00052 738 ProSiteProfiles Pre-SET domain profile. 494 556 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc1g00052 738 Pfam SAD/SRA domain 262 420 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1g00052 Stsc-Chr1 483028 494116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1g00052 249 738 EF-hand Containing Proteins AT5G13960 66.734 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc1g00052 SAD_SRA 4.1e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1g00052 K11420 - gmx:100796701 925.235