Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1g00050 ATGCATGAATGTGAAGGGAACAACAATGTGAGAAAGCGACACTATAGAGGAGTTAGGCAGAGACCGTGGGGAAAATGGGCAGCCGAAATCCGAGACCCTAAAAAAGCCGCTAGAGTTTGGTTAGGCACCTTTGACACTGCTGAAGCCGCTGCTGCTGCTTACGATTCTGCTGCTTTAAAGTTCAAAGGTAACAAAGCCAAGCTCAATTTTCCCGAGCGAGTTTCCTCCGGATCTTCCTCATCATCACCACTACTGCCACCACCGCCACAGCCACCACCGGCTACTACTGCGGTGTATCGACCTTCTTCGGTACCTTATACTCCATTATCGGAGGACGGAGGAGGGTTTCCAAACCTAATGCAGTATGCGCAGTTGCTTTGGAGTAGGGATGATGATGATCTACAACGTGTAACTTCAGGGCTTTATAATAATAACAATTTTTCATCTTATGGCGGCTCTGATGTGATGATGAATAATTCTTCATCATCTTCATCAGGGTTGTTGTCTTCTTCTTCTTCAGATTCTGCGGTTGTGAGTGGTCAAGTCCATAGCATGATGGGTGCATCATCAGCTGCACCACCACCCAAGGGATATTATAATTATTATGATTATTCTTATTTTGATCATCAAGGGACTGGTTTTGATCGCAGGAATAATTGA 660 0.4515 MHECEGNNNVRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDSAALKFKGNKAKLNFPERVSSGSSSSSPLLPPPPQPPPATTAVYRPSSVPYTPLSEDGGGFPNLMQYAQLLWSRDDDDLQRVTSGLYNNNNFSSYGGSDVMMNNSSSSSSGLLSSSSSDSAVVSGQVHSMMGASSAAPPPKGYYNYYDYSYFDHQGTGFDRRNN 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1g00050 219 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Stsc1g00050 219 MobiDBLite consensus disorder prediction 72 112 - -
Stsc1g00050 219 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Stsc1g00050 219 CDD AP2 14 72 IPR001471 GO:0003700|GO:0006355
Stsc1g00050 219 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Stsc1g00050 219 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Stsc1g00050 219 SUPERFAMILY DNA-binding domain 14 72 IPR016177 GO:0003677
Stsc1g00050 219 FunFam Ethylene-responsive transcription factor 2 13 72 - -
Stsc1g00050 219 MobiDBLite consensus disorder prediction 82 98 - -
Stsc1g00050 219 Gene3D AP2/ERF domain 13 73 IPR036955 GO:0003700|GO:0006355
Stsc1g00050 219 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Stsc1g00050 219 PANTHER DNA-BINDING DOMAIN 9 159 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1g00050 Stsc-Chr1 445018 445817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1g00050 2 99 AP2-EREBP Transcription Factor Family AT5G61890 68.367 2.98e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc1g00050 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1g00050 - - aip:107647314 233.802