Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1g00034 ATGGAGGAACTATCTGTGGCTACAAAGAATTTCAGTGACAAGAATTTGATTGGAGAAGGGAAGTTTGGGGAGGTTTATAAGGGTTTGCTTCAAGATGGCATGATTGTAGCTATCAAGAAGAGGCGCGGAATTGCGAGTCAGGAGTTTGTTGATGAGGTACGCTATCTCTCATCGATTCACCATCGGAATCTTGTAACTCTTTTAGGCTACTGCCAGGAAAACAATCTGCAGTTTCTTATATACGAATATGTGCCAAATGGAAGTGTCTCCAGTCACTTGTATGGCGCCAATCAACAATCGCGAGAGAAGCTAGAATTCAAGCATAGACTTTCAATAGCTCAAGGTGCAGCTAAAGGTTTGGCTCATCTTCACTCCTTGAGCCCCCGTTTGGTGCACAAGGATTTCAAGACGGCGAATGTTCTTGTCGATGAAAACTTCATTGCTAAGGTTGCCGACGCAGGACTCCGTAATTTTTTGGGGAGAGTTGAGATTGCAGGACCATCTTCTCTAGTAGCAGTAGATGAGATATTTCTTGCACCCGAGGTGAGAGAATTCAGACGATTTTCAGAAAAGAGCGATGTATACAGCTTTGGGGTATTCTTGCTGGAATTGTTGAGTGGGAAGGAAGCAACAGAATCAGCATCTCTGGACTCTAGCTACAATCTAGTTGAATGGGTGCAAAACAATGAAGACCATGGTATGATGTCTAACATAATTGATGAAAGATTGGGAAGCACTTTCACTGCTGAAGGAATGGAAGAATTCATAAAGCTGATAATAAGGTGTTTAGAATCTTCAAGTGAGAGAAGACCAGCCATGAGCTATGTGGTGATGGAGCTTGATAGAATACTTGAGAAAGAAGTCAACTTGACAACAATCATGGGTGAAGGCACTCCAACTGTTACCCTTGGAAGCCAATTATTCAGACCAACAACAACATAA 942 0.4246 MEELSVATKNFSDKNLIGEGKFGEVYKGLLQDGMIVAIKKRRGIASQEFVDEVRYLSSIHHRNLVTLLGYCQENNLQFLIYEYVPNGSVSSHLYGANQQSREKLEFKHRLSIAQGAAKGLAHLHSLSPRLVHKDFKTANVLVDENFIAKVADAGLRNFLGRVEIAGPSSLVAVDEIFLAPEVREFRRFSEKSDVYSFGVFLLELLSGKEATESASLDSSYNLVEWVQNNEDHGMMSNIIDERLGSTFTAEGMEEFIKLIIRCLESSSERRPAMSYVVMELDRILEKEVNLTTIMGEGTPTVTLGSQLFRPTTT 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1g00034 313 ProSiteProfiles Protein kinase domain profile. 11 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1g00034 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Stsc1g00034 313 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 289 IPR047117 -
Stsc1g00034 313 Pfam Protein tyrosine and serine/threonine kinase 15 280 IPR001245 GO:0004672|GO:0006468
Stsc1g00034 313 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Stsc1g00034 313 SUPERFAMILY Protein kinase-like (PK-like) 3 280 IPR011009 -
Stsc1g00034 313 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Stsc1g00034 313 PIRSF ILK 2 292 - -
Stsc1g00034 313 FunFam Protein kinase superfamily protein 84 297 - -
Stsc1g00034 313 Gene3D Transferase(Phosphotransferase) domain 1 84 296 - -
Stsc1g00034 313 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1g00034 Stsc-Chr1 293107 296574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1g00034 2 297 Trihelix Transcription Factor Family AT5G38560 38.511 8.75e-63 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Stsc1g00034 PK_Tyr_Ser-Thr 5.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1g00034 - - gmx:100305436 534.258