Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1g00002 ATGAATACTTTTACGTCGTCTTCGTCTTCGCAGTCGCCCAAGACCAAGAAGAAGCAAACAAAGTCACCGGCGGGAGCGCCGCAAGAGCAGCAGCCGCATGAGACGGCATGGGGAGGGAGGTACCTCGGGGTGAGGAGGAGGCCGTGGGGGAGGTACGCGGCGGAGATTCGCGACCCTTCCACTAAAGAAAGGCATTGGTTGGGCACGTTTGACACGGCTGAAGAAGCTGCCCTGGCATATGACAGGGCAGCTCGCTCCATGCGGGGCTCACGTGCCCGAACCAACTTCGTCTACCCGGACACTCCGCCGGGCTTATCCGTCACCCCAATCTTATCACCCGACCAACTGCAACCCCAAACTTATAACCATCACCACAACCATGTCCATAACTTGTCCTCCATCTTCGCCTCTAGCAATCCCATGGCAACCCGCCAGCATCATCAGCTCGACTTAGATCCAACCCTCGATCCAGTTACGTTGTTGGTTGGTGCCAACAACAACTGGGGATATAGTAACACGTACGGTTATAGCGTCAACGATGAGCAGAACAATAGCAACGGTTACTACAACAGTGGCTATGGCAACAACCAAGGTTGTCCGAATTTGGGGCACGTTTTTGTTGAAGAAGGTGGAAGTAGCAATAGCAATAGTAGTGCTTCAACGGTTGAGCTACCTCCATTGCCGCCTGATATCACAAGCTCCATTGGTTATAATAATGAGAATAATATGGATAGTCATGATCATGGTTTTGGTTACTATTGGGAGAATGATCATCAGAATATGATGAATAGTAGTGGGGATTATGTTCATGATCATAGTCCAATGTTCAATGCAATGCCAACGGTTTCGGAGAATGCGGGTGGAGCAGCTGAGGGTTTTGAATTGGGGGGCTCCTCTTTTTTCTTCTGA 909 0.505 MNTFTSSSSSQSPKTKKKQTKSPAGAPQEQQPHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYPDTPPGLSVTPILSPDQLQPQTYNHHHNHVHNLSSIFASSNPMATRQHHQLDLDPTLDPVTLLVGANNNWGYSNTYGYSVNDEQNNSNGYYNSGYGNNQGCPNLGHVFVEEGGSSNSNSSASTVELPPLPPDITSSIGYNNENNMDSHDHGFGYYWENDHQNMMNSSGDYVHDHSPMFNAMPTVSENAGGAAEGFELGGSSFFF 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1g00002 302 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Stsc1g00002 302 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
Stsc1g00002 302 Gene3D AP2/ERF domain 39 98 IPR036955 GO:0003700|GO:0006355
Stsc1g00002 302 MobiDBLite consensus disorder prediction 1 29 - -
Stsc1g00002 302 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 208 - -
Stsc1g00002 302 Pfam AP2 domain 41 89 IPR001471 GO:0003700|GO:0006355
Stsc1g00002 302 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Stsc1g00002 302 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Stsc1g00002 302 CDD AP2 40 96 IPR001471 GO:0003700|GO:0006355
Stsc1g00002 302 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Stsc1g00002 302 MobiDBLite consensus disorder prediction 1 40 - -
Stsc1g00002 302 FunFam Ethylene-responsive transcription factor 2 40 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1g00002 Stsc-Chr1 30742 31715 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1g00002 38 298 AP2-EREBP Transcription Factor Family AT5G13910 41.887 3.70e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc1g00002 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1g00002 K09286 - gmx:100815668 212.616