Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc19g00039 ATGCCTCGTGGTACCCTTGAAGTTGTTTTGATCAGTGCCAAAGGCCTTGAAGACACCGATTTTTTCGGGAAAATTGATCCTTATGTGATTCTCACATACCGATCTCAGGAGCACAAAAGCACTGTGCTAGAAGGTGCTGGAACTAAGCCACAGTGGAACGAGAGCTTCCTTTTCACTGTGATCGACAGTGCTTCTGAGCTTAATCTGAGGATCATGGATAAAGACAATCTTAGTGATGATGATTATCTTGGCGAGGCAACGATTCCTCTACATGCAGTGTTTGCTGAGGGCAGTTATCCAGAGACTTCTTATAATGTTGTAAAGGATGAAAAATTCTGTGGAGAAATCAAGGTTGCTCTCAATTTTACTCCTGAGAGTGGTGATGATGATGATTGTGGCTGTGGCGAACAGGACTTTTAG 420 0.4333 MPRGTLEVVLISAKGLEDTDFFGKIDPYVILTYRSQEHKSTVLEGAGTKPQWNESFLFTVIDSASELNLRIMDKDNLSDDDYLGEATIPLHAVFAEGSYPETSYNVVKDEKFCGEIKVALNFTPESGDDDDCGCGEQDF 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc19g00039 139 Gene3D C2 domain 2 125 IPR035892 -
Stsc19g00039 139 SMART C2_3c 5 102 IPR000008 -
Stsc19g00039 139 Pfam C2 domain 4 98 IPR000008 -
Stsc19g00039 139 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Stsc19g00039 139 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 126 IPR035892 -
Stsc19g00039 139 PANTHER C2 DOMAIN-CONTAINING 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc19g00039 Stsc-Chr19 256968 258615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc19g00039 4 94 C2H2 Transcription Factor Family AT4G21160 31.868 7.91e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc19g00039 - - adu:107473142 202.986