Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc19g00034 ATGGGGAGAGGGAAGATTGCGATTGAAAGGATAGACGACACAACAAACAGGCAGGTCACATTCTCAAAGAGAAGGACCGGCTTGATGAAGAAAGCCAGAGAGCTCTCTATTCTCTGTGATGCTGAAATTGGATTGATTGTTTTCTCCTACACCGGCAAACTTTATGAATTTGCCAGCACCAGCATGAAATCTATCACGGAGCGCTATAACAAGGTAAAAGAGGACCAAAGTCAATTAATGAACCCTGCTTCGGAAGCTAAGTTTTGGAAGCGAGAAGCTGCAACCTTGAGGCAACAACTTGAGTACTTGCAAGAAAGCCATAGGCATTTAATGGGTGAAGAACTTTCTTCATTGGGCATTAAGGAGATACAAGATTTGGAAAACCAACTGAAGATGAGTCTGAATAATGTTAGCAAGAAAAAGGTAGCTGTTCTCGGTAAAAACATGGAGCAAGAGTATGCAGAACTAGAGAAAAAGATGGAGCTCCTCCGCAGGGAGAATGAAGAACTGCAAAAGGTTGTTGAAGCACCGTTGTGGTGGCATAGGAATGAAGAAAATGCAGCAAAATCATCATCATACATCCCATATCCTATAAGCTATGGTGGCTATGTACCTCCAGCTGCACTATTTACCAATCTCCAACTAAGCAGCCACCACCAGCAGGAGGAGGAGCAGCAACAGCACAGTGGCGAACCCTGCAGATTACAGCAGCTTCTCTAA 720 0.4403 MGRGKIAIERIDDTTNRQVTFSKRRTGLMKKARELSILCDAEIGLIVFSYTGKLYEFASTSMKSITERYNKVKEDQSQLMNPASEAKFWKREAATLRQQLEYLQESHRHLMGEELSSLGIKEIQDLENQLKMSLNNVSKKKVAVLGKNMEQEYAELEKKMELLRRENEELQKVVEAPLWWHRNEENAAKSSSYIPYPISYGGYVPPAALFTNLQLSSHHQQEEEQQQHSGEPCRLQQLL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc19g00034 239 Coils Coil 123 176 - -
Stsc19g00034 239 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Stsc19g00034 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc19g00034 239 Pfam K-box region 84 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc19g00034 239 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Stsc19g00034 239 ProSiteProfiles K-box domain profile. 86 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc19g00034 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 226 - -
Stsc19g00034 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc19g00034 239 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Stsc19g00034 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc19g00034 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc19g00034 239 Coils Coil 86 106 - -
Stsc19g00034 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc19g00034 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc19g00034 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc19g00034 239 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc19g00034 Stsc-Chr19 234386 240775 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc19g00034 1 172 MADS-box Gene Family AT4G37940 59.302 1.42e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc19g00034 K-box 2.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc19g00034 K09264 - gmx:100808145 230.335