Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc19g00032 ATGGGGAGAGGGAAGATTGCGATTGAAAGGATAGACGACACAACAAACAGGCAGGTCACATTCTCAAAGAGAAGGACCGGCTTGATGAAGAAAGCCAGAGAGCTCTCTATTCTCTGTGATGCTGAAATTGGATTGATTGTTTTCTCCTGCACTGGCAAACTTTATGAATTTGCCAGCACCAGCATGAAATCTATCACGGACCGCTATAACAAGGTAAAAGAGGACCAAAATCAGTTAATGAACCCTGCTTCAGAAGCTAAGTTCTGGAAACGAGAAGCTGAAACCTTGAGGCAACAACTTGAGTACTTGCAAGAAAGCCAAAGGCATTTAATGGGTGAAGAACTTTCTTCTTTGGGCATTAAGGAGATACAAGATTTGGAAAACCAACTGAAGATGAGTCTAAATAATGTCAGCAAGAAAAAGGAAGAACTATTGACCCAAGAGATCAACCAACTGCACCAAAAGGGTAAAAACATGGAGCAAGAGTATGCAGAACTAGAGAAAAAGATGGAGCTCCTCCGCAGGGAGAATGAAGAACTGCAGAAGGTTGTTGAAGCACCGTTGTCGTGGAATAGGAATGAAGAAAATGCAACATCATCATACCCTATAAGCAATTGCTATGTATCTCCTGCTGCATTATTTACCAATCCCCAACTAAGCAACCACCACCAGGAGCAGCAGCAGCAGCAACACAGTAGCGAATCCGCCGACACAGCAATGCAACTGAGATTACAGTTACTGTAA 744 0.4301 MGRGKIAIERIDDTTNRQVTFSKRRTGLMKKARELSILCDAEIGLIVFSCTGKLYEFASTSMKSITDRYNKVKEDQNQLMNPASEAKFWKREAETLRQQLEYLQESQRHLMGEELSSLGIKEIQDLENQLKMSLNNVSKKKEELLTQEINQLHQKGKNMEQEYAELEKKMELLRRENEELQKVVEAPLSWNRNEENATSSYPISNCYVSPAALFTNPQLSNHHQEQQQQQHSSESADTAMQLRLQLL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc19g00032 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Stsc19g00032 247 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Stsc19g00032 247 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Stsc19g00032 247 Coils Coil 123 186 - -
Stsc19g00032 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc19g00032 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc19g00032 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 230 - -
Stsc19g00032 247 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc19g00032 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc19g00032 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc19g00032 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc19g00032 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc19g00032 247 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc19g00032 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc19g00032 247 Coils Coil 86 106 - -
Stsc19g00032 247 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc19g00032 Stsc-Chr19 221444 225453 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc19g00032 1 169 MADS-box Gene Family AT4G37940 60.947 1.64e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc19g00032 K-box 9.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc19g00032 K09264 - mnt:21397917 259.225