Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc19g00019 ATGGGGCCAATGGAGTTGAATTCGAGCCATGTTTCTCCCGTTCTAACGGAATCTGTGGCTGTAAACAAATCAAGATTAGGAATCCATTCTAGTCTGCTACCGTATTCCCAGCAAGATTCATCTTCACCTCTCTCCCCGGCTGCTGGGAAGCTATCAAGAACGGGTTCAAGAAAGAGTGCTGCAGGGAACATTGATGATGTTAGGTTCAATGGTTGGTTGGACGCCATGAAGGCTTCTTCCCCTCCCAGGAAGAAGATCCTTAAAGGCTCCGTTATTAATACTCTGCTTCCTTCTTCCAATATTGAATATGACAACAACGAAGACTACCATTCATTGACCGTTGATTATCCTTCAGCAATAGAGTGTTTTGGGAATATCATTGGGCGTGCTAAGAATAAAAGAGTTGCAGTGTTTCTAGATTACGATGGCACTCTTTCTCCAATAGTAGATGACCCTGACTGTGCCTTTATGTCAGACCCTATGCGTGAGACCGTTGGGAGCGTGGGAAGGTGTTTTCCAACAGCAATAATAAGTGGAAGAAGTCGTGACAATGTGTATGATTTGGTAAAACTAACAGAACTGTACTATGCGGGTAGTCATGGAATGGACATAATTGGGCCTCCTCTTCGCCATAATAATAATGATGTGTCCACCAATAACCTTCCAAATTGTGTCAATTCTACTGACCATCAGGGAAATCAGATAACTCTCTTTCAACCTGCTACACAGTTCCTCCCTATCATTGACGAGGTTTTTAGAACCCTCGTTGAGATCACTAAAGATATAAGGGGTGCAAAAGTTGAAAACCACAAGTTTTGTGTTTCTGTACATTACCGTAACGTAGAAGAGAATAATTGGACTATTATTGGACAACGTGTCCATGATGTGTTGAAAAATTACCCTGGTTTGCGTTCAACTCATGGACGGAAGGTTTTAGAGATCCGTCCAGTGATTGACTGGAACAAAGGGAAAGCAGTTCTATTTTTACTTGAATCTCTTGATCTAAACGATAAGGATGATGTGTTTCCTATCTATATTGGAGATGATAAAACCGATGAGGATGCTTTCAAGATTCTGCGAGAAAGCAATCGGGGTTGTGGGATTTTGGTGTCTTCGGTGATGAAAGAAAGCAGTGCCTCCTACTCTCTAAGAGACCCCAACCAGGTCATGGAATTTCTTCAACTCCTCCTTAACTGGAACCACAAAAGAGAAACCAAGCATTTCAACAAGCAAATTAAAGTCAAAGTATAG 1251 0.4197 MGPMELNSSHVSPVLTESVAVNKSRLGIHSSLLPYSQQDSSSPLSPAAGKLSRTGSRKSAAGNIDDVRFNGWLDAMKASSPPRKKILKGSVINTLLPSSNIEYDNNEDYHSLTVDYPSAIECFGNIIGRAKNKRVAVFLDYDGTLSPIVDDPDCAFMSDPMRETVGSVGRCFPTAIISGRSRDNVYDLVKLTELYYAGSHGMDIIGPPLRHNNNDVSTNNLPNCVNSTDHQGNQITLFQPATQFLPIIDEVFRTLVEITKDIRGAKVENHKFCVSVHYRNVEENNWTIIGQRVHDVLKNYPGLRSTHGRKVLEIRPVIDWNKGKAVLFLLESLDLNDKDDVFPIYIGDDKTDEDAFKILRESNRGCGILVSSVMKESSASYSLRDPNQVMEFLQLLLNWNHKRETKHFNKQIKVKV 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc19g00019 416 CDD HAD_TPP 136 391 - -
Stsc19g00019 416 Gene3D - 135 216 IPR023214 -
Stsc19g00019 416 Gene3D - 247 412 IPR023214 -
Stsc19g00019 416 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 53 407 IPR044651 GO:0004805|GO:0005992
Stsc19g00019 416 FunFam Trehalose 6-phosphate phosphatase 247 406 - -
Stsc19g00019 416 MobiDBLite consensus disorder prediction 34 49 - -
Stsc19g00019 416 FunFam Trehalose 6-phosphate phosphatase 241 317 - -
Stsc19g00019 416 NCBIfam HAD-IIB family hydrolase 137 360 IPR006379 -
Stsc19g00019 416 SUPERFAMILY HAD-like 136 399 IPR036412 -
Stsc19g00019 416 Pfam Trehalose-phosphatase 138 386 IPR003337 GO:0003824|GO:0005992
Stsc19g00019 416 MobiDBLite consensus disorder prediction 34 59 - -
Stsc19g00019 416 NCBIfam trehalose-phosphatase 133 397 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc19g00019 Stsc-Chr19 118567 121008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc19g00019 131 396 Trehalose Biosynthesis Gene Families AT1G70290 25.352 1.62e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc19g00019 K01087 - qsa:O6P43_024315 508.449