Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc19g00016 ATGAACGCATTTTCACATGTTCCTCCTGGGTTTCGGTTCCATCCGACGGATGAAGAACTTGTTGATTACTACCTCAGGAAAAAGATAGCTTCCAAAAGGATTGATCTCGATGTCATAAAAGATGTTGATCTCTATAAGATTGAGCCATGGGATCTTCAAGAAGTGTGCAAAATAGGAAGCGAGGATGAAAATGAATGGTACTTCTTTAGCCACAAAGATAAGAAGTACCCAACAGGAACTCGCACGAATAGAGCTACAAAGGCCGGATTCTGGAAAGCCACTGGGAGAGACAAGGCGATATACTCAAGCTCGAGGCATTGCCTTGTTGGTATGAGAAAGACTCTTGTGTTCTACAAAGGACGAGCTCCCAACGGCCTCAAATCTGACTGGATCATGCATGAGTATCGCCTTGAGTCCAATCAAAACGCAACTCCCCAGGAAGAAGGCTGGGTTGTGTGCAGAGTCTTCAAGAAGCGAATGGCCACAGTTCGCAAGATGGGAGACTATGACTCACCTTCTTGCTGGTATGATGATCAACTTCCATTCATGCAAGGACCCATGCTTCATCATGATCATCAATCTCCATCCACTCCAGTTTCTCATCATCATCATCACTACCCCTGCAAGCAAGAGCTTCCATTCCAATACAATAGCAGCCATGATGCTTTTCTCCAGCTTCCACAACTTGAAAGCCCTAAAGTGATGAGTTGCAGCAGCCCTGTGGTTAACGTTGCACCCTCCTATGGCTACGAAAACAACAACAACAATAATGGAAACTATTCATCTGAACGCATTCAGCAACAACTGCACTTGCTTTATGGTAGTAATATTGATGAGCAAGGTGTGGCGGAGCAGGTGACAGATTGGAGAGTGCTTGACAAATTTGTTGCTTCTCAACTGATGAGTCAAGATCAAGATCAGGTTTCCAAGGAAACCAGCATGGCTGATGAAGAACACATGGCTACTACTATGCTGCCAAATAATAATAATGGATCAAGGAAGCAGGACGAGTATGTTTCAACGTCTGCCTCCAGTAACTGCGACATTCACCTCTGGAATTAA 1062 0.4454 MNAFSHVPPGFRFHPTDEELVDYYLRKKIASKRIDLDVIKDVDLYKIEPWDLQEVCKIGSEDENEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSSSRHCLVGMRKTLVFYKGRAPNGLKSDWIMHEYRLESNQNATPQEEGWVVCRVFKKRMATVRKMGDYDSPSCWYDDQLPFMQGPMLHHDHQSPSTPVSHHHHHYPCKQELPFQYNSSHDAFLQLPQLESPKVMSCSSPVVNVAPSYGYENNNNNNGNYSSERIQQQLHLLYGSNIDEQGVAEQVTDWRVLDKFVASQLMSQDQDQVSKETSMADEEHMATTMLPNNNNGSRKQDEYVSTSASSNCDIHLWN 353
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc19g00016 353 FunFam NAC domain-containing protein 16 162 - -
Stsc19g00016 353 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
Stsc19g00016 353 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Stsc19g00016 353 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 276 - -
Stsc19g00016 353 Pfam No apical meristem (NAM) protein 8 137 IPR003441 GO:0003677|GO:0006355
Stsc19g00016 353 MobiDBLite consensus disorder prediction 322 353 - -
Stsc19g00016 353 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc19g00016 Stsc-Chr19 87980 90941 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc19g00016 1 352 NAC Transcription Factor Family AT1G12260 58.659 1.38e-133 383
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc19g00016 NAM 2.4e-38 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc19g00016 - - ahf:112800892 519.62