Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc19g00014 ATGGCCGACGAAGCTAAAGCCAAAGGCAACGCCGCCTTCTCCTCCGGCGACTACGCCGCCGCCATCCGCCACTTCTCCGACGCCATATCTCTCTCCCCGGACAACCACGTTCTCTACTCCAACCGATCCGCCGCCTACGCCTCACTCCAAAAGTACTCTGAGGCCTTAGCCGACGCCAAGAAGACCGTGGACCTCAAGCCCGACTGGTCCAAGGGCTACAGCCGCCTCGGCGCCGCCCACCTCGGCCTCTCCCAATACGATGACGCCGTTGCAGCATACAGAAAGGGTCTCGAAATCGACCCCAACAACGAGCCCCTGAAATCAGGCCTCGCCGATGCCCAGGCAGCCGCCTCGAAGGCGCGGTCGGCCCCTGCAAACCCCTTCGGGGACGCGTTCTCCGGGCCAGAGATGTGGGCCCGGCTCACTGCAGACCCAACGACTAGGGTTTATCTTCAGCAGCCGGATTTCGTGAAGATGATGCTGGATATTCAGAAGGATCCAAACAAATTGAACTTGTACTTGAAGGATCAGAGGGTTATGCAGGCAATTGGCGTCTTGCTCAATGTCAAGATTCGAACCCCAACCGATGATGCTGACATGCCGGAGTCCTCTTCTCCTTCTCCTTCTCCTTCGCCCTCCCCCTCCGAGAGGAAGAGGGCGGCTGAAGCTGAGCCTCCAAGGCAGCCTGAGCCTGAGCCCGAGCCCGAGCCCATGGAGTTGACCGAGGAGGAGAAGGACAAGAAGTCGAGGAAGGCAGAGGCGCAGAAGGAGAAGGAGGCTGGGAACGCAGCGTACAAGAAGAAGGAGTTTGATAGAGCTATTTATCATTACTCAAAAGCTTTGGAGTTGGATGATGAGGATATATCTTATCTCACAAACCGTGCTGCTGTTTACTTGGAAATGGGAAAGTATGAGGAATGCATAAAAGACTGTGACAAGGCTGTTGAAAGAGGAAGAGAACTAAGATCAGACTTCAAGATGATAGCAAGAGCTTTGACTAGGAAAGGAACTGCCTTGGTCAAGATGGCTAAATGCTCAAAGGATTTTGATCCTGCCATTGAGACTTTCCAGAAAGCACTTACTGAACACCGCAACCCAGACACATTGAAGAAACTTAATGAAGCTGAAAAGGCTAAGAAAGATCTAGAGCAACAAGAATATTTTGATCCAAAATTGGCTGATGAGGAGCGAGAGAAAGGAAATGAGTACTTCAAGCAACAGAAGTATCCCGAGGCTGTGAAGCATTACACAGAGTCTTTAAGGAGAAACCCTAATGATCCTAGGACTTACAGTAACAGAGCTGCATGCTACACTAAACTAGGGGCAATGCCTGAGGGTTTAAAGGATGCTGAGAAGTGCATTGAGCTTGATCCAACCTTTGTAAAGGGTTATACAAGGAAAGGTGCGGTACAGTTTTTCATGAAGGAATATGACAAGGCTTTGGAGACATATAAGGAGGGGTTGAAACTCGACCCCAACAATCAGGAGTTACTTGATGGCATTGGAAGATGTGTACAACAAATTAATAAGGCAAGCCGTGGGGATTTAACTCCCGAAGAATTGAAGGAGAGACAGGCGAAGGCAATGCAAGACCCAGAGATACAGAACATCCTCCAAGACCCAGTAATGAGACAGGTATTGGTTGATTTCCAAGAAAATCCGAAGGCTGCTCAGGAACATACGAAGAACCCAATGGTGATGAACAAAATCCAAAAACTGATCAGTGCTGGAATTGTCCAGATGAGGTAG 1749 0.502 MADEAKAKGNAAFSSGDYAAAIRHFSDAISLSPDNHVLYSNRSAAYASLQKYSEALADAKKTVDLKPDWSKGYSRLGAAHLGLSQYDDAVAAYRKGLEIDPNNEPLKSGLADAQAAASKARSAPANPFGDAFSGPEMWARLTADPTTRVYLQQPDFVKMMLDIQKDPNKLNLYLKDQRVMQAIGVLLNVKIRTPTDDADMPESSSPSPSPSPSPSERKRAAEAEPPRQPEPEPEPEPMELTEEEKDKKSRKAEAQKEKEAGNAAYKKKEFDRAIYHYSKALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDFDPAIETFQKALTEHRNPDTLKKLNEAEKAKKDLEQQEYFDPKLADEEREKGNEYFKQQKYPEAVKHYTESLRRNPNDPRTYSNRAACYTKLGAMPEGLKDAEKCIELDPTFVKGYTRKGAVQFFMKEYDKALETYKEGLKLDPNNQELLDGIGRCVQQINKASRGDLTPEELKERQAKAMQDPEIQNILQDPVMRQVLVDFQENPKAAQEHTKNPMVMNKIQKLISAGIVQMR 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc19g00014 582 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Stsc19g00014 582 Coils Coil 238 260 - -
Stsc19g00014 582 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Stsc19g00014 582 Pfam STI1 domain 135 188 IPR041243 -
Stsc19g00014 582 Pfam STI1 domain 523 574 IPR041243 -
Stsc19g00014 582 Gene3D Tetratricopeptide repeat domain 392 511 IPR011990 GO:0005515
Stsc19g00014 582 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Stsc19g00014 582 ProSiteProfiles TPR repeat profile. 254 287 IPR019734 GO:0005515
Stsc19g00014 582 Coils Coil 365 385 - -
Stsc19g00014 582 MobiDBLite consensus disorder prediction 194 263 - -
Stsc19g00014 582 FunFam Putative stress-induced-phosphoprotein 1 124 192 - -
Stsc19g00014 582 ProSiteProfiles TPR repeat profile. 427 460 IPR019734 GO:0005515
Stsc19g00014 582 SUPERFAMILY TPR-like 253 380 IPR011990 GO:0005515
Stsc19g00014 582 FunFam Stress-induced phosphoprotein 1 251 385 - -
Stsc19g00014 582 FunFam Stress-induced phosphoprotein 1 1 116 - -
Stsc19g00014 582 PANTHER TPR REPEAT CONTAINING PROTEIN 2 554 - -
Stsc19g00014 582 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 514 582 - -
Stsc19g00014 582 Pfam Tetratricopeptide repeat 7 68 - -
Stsc19g00014 582 ProSiteProfiles TPR repeat profile. 461 494 IPR019734 GO:0005515
Stsc19g00014 582 FunFam hsp70-Hsp90 organizing protein 3-like 392 506 - -
Stsc19g00014 582 ProSiteProfiles TPR repeat profile. 393 426 IPR019734 GO:0005515
Stsc19g00014 582 Pfam Tetratricopeptide repeat 462 494 IPR001440 GO:0005515
Stsc19g00014 582 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Stsc19g00014 582 MobiDBLite consensus disorder prediction 217 263 - -
Stsc19g00014 582 Gene3D - 512 582 - -
Stsc19g00014 582 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Stsc19g00014 582 SMART CBM 134 173 IPR006636 -
Stsc19g00014 582 SMART CBM 531 570 IPR006636 -
Stsc19g00014 582 Pfam TPR repeat 400 441 - -
Stsc19g00014 582 Pfam TPR repeat 261 302 - -
Stsc19g00014 582 Gene3D Tetratricopeptide repeat domain 251 387 IPR011990 GO:0005515
Stsc19g00014 582 SMART tpr_5 393 426 IPR019734 GO:0005515
Stsc19g00014 582 SMART tpr_5 461 494 IPR019734 GO:0005515
Stsc19g00014 582 SMART tpr_5 329 366 IPR019734 GO:0005515
Stsc19g00014 582 SMART tpr_5 36 69 IPR019734 GO:0005515
Stsc19g00014 582 SMART tpr_5 254 287 IPR019734 GO:0005515
Stsc19g00014 582 SMART tpr_5 288 321 IPR019734 GO:0005515
Stsc19g00014 582 SMART tpr_5 70 103 IPR019734 GO:0005515
Stsc19g00014 582 SMART tpr_5 2 35 IPR019734 GO:0005515
Stsc19g00014 582 SMART tpr_5 427 460 IPR019734 GO:0005515
Stsc19g00014 582 SUPERFAMILY TPR-like 392 505 IPR011990 GO:0005515
Stsc19g00014 582 ProSiteProfiles TPR repeat region circular profile. 461 494 - -
Stsc19g00014 582 Gene3D - 124 191 - -
Stsc19g00014 582 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc19g00014 Stsc-Chr19 72531 76041 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc19g00014 392 504 U-box Gene Family AT3G07370 28.319 2.89e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc19g00014 K09553 - gmx:100816776 946.036