Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc19g00011 ATGGGGAGGCAACCATGCTGTGACAAAGTTGGGGTGAAGAAAGGTCCATGGACAGCTGAAGAAGACAAGAAGCTCATAAACTTCATTGTGAACAATGGACAGTGCTGCTGGAGAACTCTGCCTAAGCTTGCTGGTCTTAAGCGTTGCGGTAAGAGCTGCCGTCTTCGTTGGACCAATTATCTTCGCCCTGACTTGAAGAGAGGCCTCCTCTCTCATTCTGAGGAGCAGCTTGTCATCGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATAGCTTCAAGATTACCAGGAAGGACGGATAATGAGATTAAGAATCATTGGAACACACACATCAAGAAAAAACTCCTTAAGATGGGTATCGACCCTGTCACTCATCAACCTCTTGTTGATAACCACCAGCAACAACTAGTTTCATCATCTTCATCTTCATCTTCGTCTTCGTCTCAATCAGCAGAGCAATTGCCACGGCAACCTCAACAAAACCTCATGATCAAGGATACTGATGATGATAATAAAAACAACAACAATGGTGTACCGGCTCCCATGAATTCACAGCAGGAGAGCTCGTGGAGTTCGTCATCACAAATTACATCAACTGAAAACTCTTGTTGTGCATCAGGGGATGGGGATGAGTCCCTCTTGCTTGATAGCATTTGCAGCGATGAATCTCTAATTTTGAACAGCTTGTGGCTTGACGATACTCCACTGGTTGATGCATTATGGGACACTACTACACCTACATCTTGCTTATTGGACTGTCAAGACTTTGGAATTCATGACTTTGGTTTTAACTCTTTCACTGACACTGATGAACAAAATTCACTCCAAACTCTGAAAATGGAGGACAAAACACATTACCATATAGTTTAA 873 0.4387 MGRQPCCDKVGVKKGPWTAEEDKKLINFIVNNGQCCWRTLPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLSHSEEQLVIDLHARLGNRWSKIASRLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHQPLVDNHQQQLVSSSSSSSSSSSQSAEQLPRQPQQNLMIKDTDDDNKNNNNGVPAPMNSQQESSWSSSSQITSTENSCCASGDGDESLLLDSICSDESLILNSLWLDDTPLVDALWDTTTPTSCLLDCQDFGIHDFGFNSFTDTDEQNSLQTLKMEDKTHYHIV 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc19g00011 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc19g00011 290 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc19g00011 290 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Stsc19g00011 290 CDD SANT 16 61 IPR001005 -
Stsc19g00011 290 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc19g00011 290 FunFam MYB transcription factor 11 67 - -
Stsc19g00011 290 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 201 - -
Stsc19g00011 290 Gene3D - 70 177 - -
Stsc19g00011 290 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc19g00011 290 SMART sant 13 63 IPR001005 -
Stsc19g00011 290 SMART sant 66 114 IPR001005 -
Stsc19g00011 290 MobiDBLite consensus disorder prediction 174 194 - -
Stsc19g00011 290 Gene3D - 12 67 - -
Stsc19g00011 290 MobiDBLite consensus disorder prediction 133 194 - -
Stsc19g00011 290 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc19g00011 290 CDD SANT 71 112 IPR001005 -
Stsc19g00011 290 MobiDBLite consensus disorder prediction 133 163 - -
Stsc19g00011 290 FunFam MYB transcription factor 70 150 - -
Stsc19g00011 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc19g00011 Stsc-Chr19 52520 53971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc19g00011 1 264 MYB Transcription Factor Family AT4G22680 53.986 3.41e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc19g00011 Myb_DNA-binding 3.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc19g00011 K09422 - gmx:100786965 348.591