Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc19g00008 ATGAAATCCCTTGGTTTCCTTCTTTCATTGCTTGTGCTGGTTGCATTTCCCATTGTGCAGCTGGTTCATGGAAATGCAGAACTGAGAGCTCTTATGGACTTGAAATCCTCACTAGACCCAGAGGGAAAGATCCTTAGCTCTTGGAGCAGTGATGGTGATCCATGCAGTGGCTTGTTCCAAGGTGTTGCTTGCAATGAGAACCGTAAAGTGGCCAACATTTCCTTGCAGGGAAAGGGACTTTCAGGGTGGTTATCTCCTTCTGTGGCTGAACTTAAATGCTTGTCAGGCTTATACCTTCATTACAACAACCTTTCTGGTGAGATACCCCCACAGATTTCAAATCTTACTGATCTTGTTGATCTCTATCTCGACGTGAATAGTCTCTCCGGAACCATACCTTCTGAGATCGGAAACATGGCTAGTCTCCAAGTGGTGCAGTTAGGAGACAACAAATTGGTGGGGAGTATACCTAAACAGATGGGCTCCTTGAAGCAGCTTAATACTCTTGCATTGCAATATAACAAATTAAGTGGCGAAATTCCTCTAAGCTTGGGAAACTTGGAAAAGCTAAGCAGGCTGAATTTGAGCTTTAACAATTTCACTGGTATGATTCCTGCAACATTAGCTCACCTTGAACAACTCAAGGTTCTAGACATTCAAAACAATTCTCTATCAGGGATTGTTCCTTCAGCATTGAAGAGACTGGGAGATGGATTCCAAGGAGCAAACAACCAAGGTTTATGTGGAGTTGGGTTTTCTACTCTGAGAGCTTGCAACAAAGATCAAGACATAAAAGTTAACCATATTGATAACTCAGACCAAGATTTTCCCAAAAATGATGATACTGCAAACTCTCTTCCAGAGCCTGCAAATGTGCGGTTGAATTGTAACCAGACTCATTGCTCAAAATCAAGGAAGTTTCCTCAGGCTGTAATCACAGCAGGTCTTGTGACAATCACTCTCACATTCTTCAGCATTGGATTTCTTACTTTTGTCAAATACCGCCGGCAAAAGCAGAGGATTAGGAATACATCCGACTCGTCTGAAGGGAAACTTAGTCCTTACCAGCCTAAAGACTTCGTCAGGAAAAGTCCATCTCCACTTGTTAACCTTGAGCATCACAATGGATGGGATCCACTGTCTAATCTATATCCAAACCAGGTCAGGTTTAATGTGGATGAGGTAGAGTCTGCAACACAGTACTTTTCGGAATCCAATTTATTGAGTAAGAGCAAATTCTCAGCAGTTTATAAGGGAGTGCTCAGAGATGGTTCTCTTGTGGCCATAAGAAGCATTAACTCAACATGCTGCAAAACTGAGGAAGCCGAGTTTGTGAAGGGCCTGACCTTAGTAACCTCACTGAGACATGAAAATCTTGTTAGGCTCAGAGGTTTCTGCTGCTCAAGAAGTAGAGGTGAATGTTTCCTAATCTATGACTTTGCCACCAATGGAAACCTGTCTCAATATCTTGATATTGAAGATGGAAATGGGCACGTGCTTGAATGGTCCAAGAGGCTCTCCATCATCAAGGGCATTGCAAAGGGTATTGCATATCTCCACGGTAATGAAGCAAGCAAACCTTCACTAATACATCAGAATATTTCAGTTGAAAATGTTCTCCTTGACCAACAGTTCAACCCATTGATCATGGATGCTGGGCTCCCCAAGCTTCTTGCAGATGACGTCGTTTTCTCGGCTCTGAAAGTGAGTGCTGCTATGGGGTACCTGGCCCCTGAATATGTTACTACAGGACGCTTCACTGAGAAGAGTGACATCTACGCATTTGGTGTCATTGTTCTTCAAGTTCTGTCTGGGAGGAAAACTATAGGTGGTTCAATACGGTTGGCAGTTGAATCTCTGAGATTTGATGATTTTGTTGACAGAAATCTGAAGGGAAGATATTCCAAACTTGAGGCAACAGTGCTTTCAAAGCTTGCAACACTCTGCACCCATGAACTTCCAGACCAAAGGCCAACTATGGTGGATGTGATTCAAGAGCTGAGTGTGTTTCCTGCTCATTCATGA 2025 0.4311 MKSLGFLLSLLVLVAFPIVQLVHGNAELRALMDLKSSLDPEGKILSSWSSDGDPCSGLFQGVACNENRKVANISLQGKGLSGWLSPSVAELKCLSGLYLHYNNLSGEIPPQISNLTDLVDLYLDVNSLSGTIPSEIGNMASLQVVQLGDNKLVGSIPKQMGSLKQLNTLALQYNKLSGEIPLSLGNLEKLSRLNLSFNNFTGMIPATLAHLEQLKVLDIQNNSLSGIVPSALKRLGDGFQGANNQGLCGVGFSTLRACNKDQDIKVNHIDNSDQDFPKNDDTANSLPEPANVRLNCNQTHCSKSRKFPQAVITAGLVTITLTFFSIGFLTFVKYRRQKQRIRNTSDSSEGKLSPYQPKDFVRKSPSPLVNLEHHNGWDPLSNLYPNQVRFNVDEVESATQYFSESNLLSKSKFSAVYKGVLRDGSLVAIRSINSTCCKTEEAEFVKGLTLVTSLRHENLVRLRGFCCSRSRGECFLIYDFATNGNLSQYLDIEDGNGHVLEWSKRLSIIKGIAKGIAYLHGNEASKPSLIHQNISVENVLLDQQFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYVTTGRFTEKSDIYAFGVIVLQVLSGRKTIGGSIRLAVESLRFDDFVDRNLKGRYSKLEATVLSKLATLCTHELPDQRPTMVDVIQELSVFPAHS 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc19g00008 674 FunFam Protein NSP-INTERACTING KINASE 2 481 671 - -
Stsc19g00008 674 Gene3D Transferase(Phosphotransferase) domain 1 481 670 - -
Stsc19g00008 674 Gene3D Phosphorylase Kinase; domain 1 368 480 - -
Stsc19g00008 674 Gene3D Ribonuclease Inhibitor 24 174 IPR032675 -
Stsc19g00008 674 SMART LRR_typ_2 91 115 IPR003591 -
Stsc19g00008 674 SMART LRR_typ_2 211 234 IPR003591 -
Stsc19g00008 674 SMART LRR_typ_2 187 210 IPR003591 -
Stsc19g00008 674 SMART LRR_typ_2 139 163 IPR003591 -
Stsc19g00008 674 SUPERFAMILY L domain-like 27 233 - -
Stsc19g00008 674 FunFam Protein NSP-INTERACTING KINASE 2 374 480 - -
Stsc19g00008 674 FunFam Protein NSP-INTERACTING KINASE 2 24 173 - -
Stsc19g00008 674 Gene3D Ribonuclease Inhibitor 175 245 IPR032675 -
Stsc19g00008 674 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 160 670 IPR046959 -
Stsc19g00008 674 Pfam Leucine rich repeat 189 235 IPR001611 GO:0005515
Stsc19g00008 674 ProSiteProfiles Protein kinase domain profile. 402 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc19g00008 674 SUPERFAMILY Protein kinase-like (PK-like) 376 668 IPR011009 -
Stsc19g00008 674 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Stsc19g00008 674 Pfam Protein tyrosine and serine/threonine kinase 406 667 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc19g00008 Stsc-Chr19 40935 43728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc19g00008 6 515 Miscellaneous Gene Families AT4G22730 56.415 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Stsc19g00008 PK_Tyr_Ser-Thr 4.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc19g00008 - - gmx:100777169 1076.23